Table 2.
Identified clusters, annotated cell type, representative genes and their corresponding proportions
| Cluster | Cell type | Representative genes | Proportion |
|---|---|---|---|
| 0 | CD4 + Tn | CCR7, LEF1 | 16.01% |
| 5 | CD4 + Trm | NR4A2, IL7R, PTGER4 | 7.79% |
| 8 | CD4 + Tm | S100A4, LTB | 6.17% |
| 1 | CD8 + Temra | PRF1, KLRG1, GZMH | 12.91% |
| 2 | CD8 + Tem | GZMK | 10.53% |
| 7 | CD8 + Tn | CCR7, LEF1 | 6.25% |
| 3 | Natural killer cell | GNLY, NKG7 | 8.04% |
| 11 | Natural killer cell | GNLY, NKG7 | 3.52% |
| 4 | B cell | IGKC | 7.94% |
| 9 | B cell | IGHD | 5.52% |
| 10 | B cell | MS4A1 | 3.73% |
| 6 | Classical Monocyte | CD14, S100A9, LYZ | 6.30% |
| 14 | Nonclassical Monocyte | CD16, FCGR3A, TCF7L2 | 0.64% |
| 15 | Monocyte | CD14, CLEC12A | 0.43% |
| 12 | Megakaryocyte | PPBP, PF4 | 2.64% |
| 13 | Myeloid dendritic cell | HLA-DRB1, HLA-DRB5 | 0.87% |
| 16 | Plasmacytoid dendritic cell | IRF7, IRF8 | 0.43% |
| 17 | STMN + T cell | CD3D, STMN | 0.28% |
Tn Naïve T cell, Trm resident memory T cell, Tm memory T cell, Temra effector memory RA + T cell, Tem effector memory T cell