Table 1.

Key resources

Deposited Data	Identifier
Hammond et. al. 2019	GEO: GSE121654
Marisca et. al. 2020	GEO: GSE132166
Marques et. al. 2016	GEO: GSE75330
Zeisel et. al. 2018	http://mousebrain.org/
Zhang et. al. 2014	GEO: GSE52564
Polioudakis et. al. 2019	dbGaP: phs001836
Lake et. al. 2018	GEO: GSE97930
Habib et. al. 2017	GEO: GSE104525
Zhang et. al. 2016	GEO: GSE73721
Jäkel et. al. 2019	GEO: GSE118257
Absinta et. al. 2021	GEO: GSE180759
Marmoset Gene Atlas	https://gene-atlas.brainminds.riken.jp/
Marmoset Brain Mapping	https://marmosetbrainmapping.org/
Software and Algorithms	Identifier
R (v3.6.1 2019-07-05)	https://cran.r-project.org/bin/macosx/
Cellranger (v3.0.2)	https://www.10xgenomics.com/
seurat (v3.1.5)	https://github.com/satijalab/seurat
DoubletFinder (v2.0.2)	https://github.com/chris-mcginnis-ucsf/DoubletFinder
clustree (v0.4.3)	https://github.com/lazappi/clustree
SoupX (v1.4.5)	https://github.com/constantAmateur/SoupX
harmony (v1.0)	https://github.com/immunogenomics/harmony
monocle3 (v0.2.0)	https://github.com/cole-trapnell-lab/monocle3
gprofiler2 (v0.1.9)	https://cran.r-project.org/web/packages/gprofiler2/index.html
nichenetr (v0.1.0)	https://github.com/saeyslab/nichenetr
EWCE (v0.99.2)	https://github.com/NathanSkene/EWCE
Ingenuity Pathway Analysis (v01-16)	https://digitalinsights.qiagen.com/product-login/
Fiji (v2.1.0/1.53c)	https://imagej.net/Fiji/Downloads
Other	Identifier
CjPCA website	https://cjpca.ninds.nih.gov