Table 1.
Baseline of patients with IEI in our cohort.
| Number of cases | ||
|---|---|---|
| Total patients | 505 | |
| novelty diagnosed IEI | 402 | |
| admitted due to infections | 425 | |
| Culture | 505 | |
| blood stream | 505 | |
| sputum | 260 | |
| BALF | 142 | |
| bone marrow | 10 | |
| hydrothorax | 1 | |
| ascites | 0 | |
| blood+BALF | 142 | |
| blood+sputum | 260 | |
| Histopathology | 73 | |
| lymph node | 39 | |
| colon | 46 | |
| liver | 11 | |
| bronchial mucosa | 4 | |
| skin | 12 | |
| bone | 4 | |
| mNGS | 232 | |
| blood | 131 | |
| sputum | 32 | |
| BALF | 131 | |
| bone marrow | 1 | |
| hydrothorax/ lung abscess | 3 | |
| ascites | 0 | |
| biopsy | 36 | |
| lymph node | 17 | |
| liver | 10 | |
| lung | 3 | |
| skin | 4 | |
| bone | 2 | |
| blood+BALF | 53 | |
| blood+sputum | 21 | |
| Culture + mNGS simultaneously | 232 | |
| blood | 131 | |
| BALF | 131 | |
| sputum | 32 | |
| Histopathology + mNGS simultaneously | 33 | |
| lymph node | 17 | |
| liver | 9 | |
| lung | 3 | |
| skin | 2 | |
| bone | 2 | |