Antibodies |
|
BrdU (Bu20a) Mouse mAb |
Cell signaling Technology |
Cat#5292S; RRID: AB_10548898
|
HIF-1α |
Novus Biologicals |
Cat#NB100-449; RRID: AB_10001045
|
HIF-2α |
Novus Biologicals |
Cat#NB100-122; RRID: AB_10002593
|
Lamin B1 (D9V6H) Rabbit mAb |
Cell signaling Technology |
Cat# 13435; RRID: AB_2737428
|
Goat Anti-Mouse IgG H&L (Alexa Fluor® 488) |
Abcam |
Cat#ab150113; RRID: AB_2576208
|
Goat anti rabbit Alexa Fluor® 594 |
Invitrogen |
Cat#A32740; RRID: AB_2762824
|
Goat anti-Rabbit IgG (H + L) Secondary Antibody [HRP] |
Novus Biologicals |
Cat#NB7160; RRID: AB_524669
|
Anti-phospho-PDHE1-A type I (Ser293) |
Sigma-Aldrich |
Cat#ABS204; RRID: AB_11213668
|
PDH E1 alpha Polyclonal Antibody |
Thermo Scientific™ |
Cat#18068-1-AP; RRID: AB_2162931
|
Purified anti-GAPDH Antibody |
BioLegend |
Cat#631402; RRID: AB_2107422
|
|
Chemicals, peptides, and recombinant proteins |
|
EGM™-2 Endothelial Cell Growth Medium-2 BulletKit™ |
Lonza |
Cat#CC-3162 |
Quality Biological Inc Trypsin (0.25%) – EDTA (0.02%) |
Thermo Scientific™ |
Cat#50983216 |
Dimethyl sulfoxide |
Sigma-Aldrich |
Cat#D8418 |
Dimethyloxalylglycine (DMOG) |
Cayman Chemical |
Cat# 71210 |
Trimethyl citrate |
Sigma-Aldrich |
Cat#27502 |
Methyl pyruvate |
Thermo Scientific™ |
Cat#A13966 |
N-Methyl-L-aspartic acid |
Santa Cruz |
sc-212234 |
Nicotinamide riboside |
Cayman Chemical |
Cat#23132 |
Gibco™ DPBS, no calcium, no magnesium |
Thermo Scientific™ |
Cat#14190250 |
Invitrogen™ Image-iT™ Fixative Solution (4% formaldehyde, methanol-free) |
Thermo Scientific™ |
Cat#R37814
|
UltraPure™ DNase/RNase-Free Distilled Water |
Thermo Scientific™ |
Cat#10977023 |
Sodium dichloroacetate (DCA) |
Sigma-Aldrich |
Cat#347795 |
MTT (3-(4,5-Dimethylthiazol-2-yl)-2,5-Diphenyltetrazolium Bromide) |
Thermo Scientific™ |
Cat#M6494 |
BD Bromodeoxyuridine (BrdU) |
Thermo Scientific™ |
Cat#BDB550891 |
Vectashield Vibrance Antifade Mounting Medium with DAPI - 10 mL |
Thermo Scientific™ |
Cat#NC1601055 |
PureLink™ RNase A |
Thermo Scientific™ |
Cat#12091021 |
Propidium Iodide |
Thermo Scientific™ |
Cat# P3566 |
Thermo Scientific™ RIPA Lysis and Extraction Buffer |
Thermo Scientific™ |
Cat#PI89901 |
Pierce™ Protease Inhibitor Mini Tablets, EDTA-free |
Thermo Scientific™ |
Cat#A32955 |
Pierce™ Phosphatase Inhibitor Mini Tablets |
Thermo Scientific™ |
Cat#A32957 |
NuPAGE™ LDS Sample Buffer (4X) |
Thermo Scientific™ |
Cat#NP0007 |
Novex™ Tris-Glycine SDS Running Buffer (10X) |
Thermo Scientific™ |
LC2675 |
Novex™ Tris-Glycine Transfer Buffer (25X) |
Thermo Scientific™ |
Cat#LC3675 |
PageRuler™ Plus Prestained Protein Ladder, 10 to 250 kDa |
Thermo Scientific™ |
Cat#26619 |
Methanol (Certified ACS), Fisher Chemical™ |
Thermo Scientific™ |
A4124 |
SuperSignal™ West Femto Maximum Sensitivity Substrate |
Thermo Scientific™ |
Cat#34095 |
TWEEN® 20 |
Sigma-Aldrich |
Cat#P9416-100ML |
Acetonitrile (LC-MS) |
MilliporeSigma |
Cat# 1000294000 |
Water, BAKER ANALYZED™ LC/MS Reagent Grade |
J.T. Baker |
Cat#9831-02 |
|
Critical commercial assays |
|
Angiogenesis Assay Kit (In Vitro) |
Abcam |
Cat#ab204726 |
Human NADH dehydrogenase ELISA Kit (Complex I) |
Abcam |
Cat#ab178011 |
Complex I Enzyme Activity Microplate Assay Kit (Colorimetric) |
Abcam |
Cat#ab109721 |
Pierce™ Rapid Gold BCA Protein Assay Kit |
Thermo Scientific™ |
Cat# A53226
|
|
Deposited data |
|
RNAseq data |
This manuscript-GEO |
GSE189504 |
|
Experimental models: Cell lines |
|
Primary Pulmonary Artery Endothelial Cells; Normal, Human (HPAEC) |
ATCC |
Cat# PCS-100-022 |
|
Software and algorithms |
|
Prism |
Graphpad |
https://www.graphpad.com/scientific-software/prism/ |
FIJI ImageJ |
NIH |
https://imagej.net/software/fiji/downloads |
FastQC |
Babraham Bioinformatics |
http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ |
Adobe Illustrator |
Adobe |
https://www.adobe.com/products/illustrator.html |
edgeR |
Bioconductor |
http://bioconductor.org/packages/release/bioc/html/edgeR.html |
Xcalibur 4.1 |
Thermo Fisher Scientific |
https://assets.thermofisher.com/TFS-Assets/CMD/manuals/man-xcali-97928-xcalibur-41-quan-start-manxcali97928-en.pdf |
TraceFinder 4.1 |
Thermo Fisher Scientific |
https://www.thermofisher.com/us/en/home/industrial/mass-spectrometry/liquid-chromatography-mass-spectrometry-lc-ms/lc-ms-software/lc-ms-data-acquisition-software/tracefinder-software.html |
|
Other |
|
Western Blotting Filter Paper, Extra Thick, 7 cm × 8.4 cm |
Thermo Scientific™ |
Cat#88605 |
Novex™ WedgeWell™ 6%, Tris-Glycine, 1.0 mm, Mini Protein Gels |
Thermo Scientific™ |
Cat#XP00060BOX |
Novex™ WedgeWell™ 6%, Tris-Glycine, 1.0 mm, Mini Protein Gels |
Thermo Scientific™ |
Cat#XP00062BOX |
Novex WedgeWell 4 to 20%, Tris-Glycine, 1.0 mm, Mini Protein Gel, 10-well |
Thermo Scientific™ |
Cat#XP04200BOX |
Novex WedgeWell 4 to 20%, Tris-Glycine, 1.0 mm, Mini Protein Gel, 12-well |
Thermo Scientific™ |
Cat#XP04202BOX |
Nitrocellulose Membrane, 0.45 μm |
Bio-rad |
Cat#1620115 |