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. 2022 Sep 6;25(10):105086. doi: 10.1016/j.isci.2022.105086
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

BrdU (Bu20a) Mouse mAb Cell signaling Technology Cat#5292S; RRID: AB_10548898
HIF-1α Novus Biologicals Cat#NB100-449; RRID: AB_10001045
HIF-2α Novus Biologicals Cat#NB100-122; RRID: AB_10002593
Lamin B1 (D9V6H) Rabbit mAb Cell signaling Technology Cat# 13435; RRID: AB_2737428
Goat Anti-Mouse IgG H&L (Alexa Fluor® 488) Abcam Cat#ab150113; RRID: AB_2576208
Goat anti rabbit Alexa Fluor® 594 Invitrogen Cat#A32740; RRID: AB_2762824
Goat anti-Rabbit IgG (H + L) Secondary Antibody [HRP] Novus Biologicals Cat#NB7160; RRID: AB_524669
Anti-phospho-PDHE1-A type I (Ser293) Sigma-Aldrich Cat#ABS204; RRID: AB_11213668
PDH E1 alpha Polyclonal Antibody Thermo Scientific™ Cat#18068-1-AP; RRID: AB_2162931
Purified anti-GAPDH Antibody BioLegend Cat#631402; RRID: AB_2107422

Chemicals, peptides, and recombinant proteins

EGM™-2 Endothelial Cell Growth Medium-2 BulletKit™ Lonza Cat#CC-3162
Quality Biological Inc Trypsin (0.25%) – EDTA (0.02%) Thermo Scientific™ Cat#50983216
Dimethyl sulfoxide Sigma-Aldrich Cat#D8418
Dimethyloxalylglycine (DMOG) Cayman Chemical Cat# 71210
Trimethyl citrate Sigma-Aldrich Cat#27502
Methyl pyruvate Thermo Scientific™ Cat#A13966
N-Methyl-L-aspartic acid Santa Cruz sc-212234
Nicotinamide riboside Cayman Chemical Cat#23132
Gibco™ DPBS, no calcium, no magnesium Thermo Scientific™ Cat#14190250
Invitrogen™ Image-iT™ Fixative Solution (4% formaldehyde, methanol-free) Thermo Scientific™ Cat#R37814
UltraPure™ DNase/RNase-Free Distilled Water Thermo Scientific™ Cat#10977023
Sodium dichloroacetate (DCA) Sigma-Aldrich Cat#347795
MTT (3-(4,5-Dimethylthiazol-2-yl)-2,5-Diphenyltetrazolium Bromide) Thermo Scientific™ Cat#M6494
BD Bromodeoxyuridine (BrdU) Thermo Scientific™ Cat#BDB550891
Vectashield Vibrance Antifade Mounting Medium with DAPI - 10 mL Thermo Scientific™ Cat#NC1601055
PureLink™ RNase A Thermo Scientific™ Cat#12091021
Propidium Iodide Thermo Scientific™ Cat# P3566
Thermo Scientific™ RIPA Lysis and Extraction Buffer Thermo Scientific™ Cat#PI89901
Pierce™ Protease Inhibitor Mini Tablets, EDTA-free Thermo Scientific™ Cat#A32955
Pierce™ Phosphatase Inhibitor Mini Tablets Thermo Scientific™ Cat#A32957
NuPAGE™ LDS Sample Buffer (4X) Thermo Scientific™ Cat#NP0007
Novex™ Tris-Glycine SDS Running Buffer (10X) Thermo Scientific™ LC2675
Novex™ Tris-Glycine Transfer Buffer (25X) Thermo Scientific™ Cat#LC3675
PageRuler™ Plus Prestained Protein Ladder, 10 to 250 kDa Thermo Scientific™ Cat#26619
Methanol (Certified ACS), Fisher Chemical™ Thermo Scientific™ A4124
SuperSignal™ West Femto Maximum Sensitivity Substrate Thermo Scientific™ Cat#34095
TWEEN® 20 Sigma-Aldrich Cat#P9416-100ML
Acetonitrile (LC-MS) MilliporeSigma Cat# 1000294000
Water, BAKER ANALYZED™ LC/MS Reagent Grade J.T. Baker Cat#9831-02

Critical commercial assays

Angiogenesis Assay Kit (In Vitro) Abcam Cat#ab204726
Human NADH dehydrogenase ELISA Kit (Complex I) Abcam Cat#ab178011
Complex I Enzyme Activity Microplate Assay Kit (Colorimetric) Abcam Cat#ab109721
Pierce™ Rapid Gold BCA Protein Assay Kit Thermo Scientific™ Cat# A53226

Deposited data

RNAseq data This manuscript-GEO GSE189504

Experimental models: Cell lines

Primary Pulmonary Artery Endothelial Cells; Normal, Human (HPAEC) ATCC Cat# PCS-100-022

Software and algorithms

Prism Graphpad https://www.graphpad.com/scientific-software/prism/
FIJI ImageJ NIH https://imagej.net/software/fiji/downloads
FastQC Babraham Bioinformatics http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Adobe Illustrator Adobe https://www.adobe.com/products/illustrator.html
edgeR Bioconductor http://bioconductor.org/packages/release/bioc/html/edgeR.html
Xcalibur 4.1 Thermo Fisher Scientific https://assets.thermofisher.com/TFS-Assets/CMD/manuals/man-xcali-97928-xcalibur-41-quan-start-manxcali97928-en.pdf
TraceFinder 4.1 Thermo Fisher Scientific https://www.thermofisher.com/us/en/home/industrial/mass-spectrometry/liquid-chromatography-mass-spectrometry-lc-ms/lc-ms-software/lc-ms-data-acquisition-software/tracefinder-software.html

Other

Western Blotting Filter Paper, Extra Thick, 7 cm × 8.4 cm Thermo Scientific™ Cat#88605
Novex™ WedgeWell™ 6%, Tris-Glycine, 1.0 mm, Mini Protein Gels Thermo Scientific™ Cat#XP00060BOX
Novex™ WedgeWell™ 6%, Tris-Glycine, 1.0 mm, Mini Protein Gels Thermo Scientific™ Cat#XP00062BOX
Novex WedgeWell 4 to 20%, Tris-Glycine, 1.0 mm, Mini Protein Gel, 10-well Thermo Scientific™ Cat#XP04200BOX
Novex WedgeWell 4 to 20%, Tris-Glycine, 1.0 mm, Mini Protein Gel, 12-well Thermo Scientific™ Cat#XP04202BOX
Nitrocellulose Membrane, 0.45 μm Bio-rad Cat#1620115