| ANTE | Atlas of Normal Tissue Expression |
| ComBat | COMpensation of BATch effects |
| CS | Column Sample |
| CuBlock | Cubic Blocks |
| DBNorm | Distribution-Based Normalization |
| DisTran | Distribution Transformation |
| DESeq(2) | Differential Gene Expression in Sequencing (2) |
| DWD | Distance-Weighted Distribution |
| EB | Empirical Bayes |
| ESLR | Elastic Shared LASSO Regularization |
| FCQN | Feature-Specific QN |
| fRMA | Frozen Robust Microarray Analysis |
| gcRMA | GeneChip Robust Microarray Analysis |
| GEO | Gene Expression Omnibus |
| GQ | Gene Quantiles |
| GTEx | Genotype Tissue Expression |
| IBN | Integrative Bayesian Network |
| IG | Information Gain |
| LASSO | Least Absolute Shrinkage and Selection Operator |
| MAQC | Microarray Quality Control |
| MBEI | Model-Based Expression Indices |
| MC | Median Center |
| MH | Microarray Hybridization |
| ML | Machine Learning |
| MM | MatchMixeR |
| MRS | Median Rank Score |
| NGS | Next-Generation Sequencing |
| NorDi | Normalized Discretization |
| PAM | Prediction Analysis for Microarrays |
| PCA | Principal Component Analysis |
| PILER | Probe Logarithmic Intensity ERror |
| PLIDA | PLatform-Independent Latent Dirichlet Allocation |
| PRIDE | PRoteomics Identification DatabasE |
| QD | Quantile Discretization |
| QN | Quantile Normalization |
| QNR | Qunatile Normalization (Robust) |
| RMA | Robust Microarray Analysis |
| SEQC | Sequencing Quality Control |
| SVM | support vector machine |
| TCGA | The Cancer Genome Atlas |
| TDM | Training Distribution Machine |
| UPC | Universal exPression Code |
| WM | Watermelon Multisection |
| XPC | Cross-Platform Comparison |
| XPN | Cross-Platform Normalization |