TABLE 3.
Mapping of sites needed for repression of trbBp by KorB and TrbAa
Reporter plasmid | KorBb
|
TrbAd
|
||||||||
---|---|---|---|---|---|---|---|---|---|---|
Presence (+) or absence (−) of repressor | Overnight culture (+ 0.05 mM IPTG)
|
Logarithmic culture (+ 0.5 mM IPTG)
|
Presence (+) or absence (−) of repressor | Overnight culture (+ 0.05 mM IPTG)
|
Logarithmic culture (+ 0.5 mM IPTG)
|
|||||
XylE unitsa | Rc | XylE unitse | Rc | XylE unitse | Rc | XylE unitse | Rc | |||
pGBT63 | + | 0.53 | 24.3 | 0.053 | 48.9 | + | 0.84 | 18 | 0.39 | 3.54 |
− | 12.9 | 2.59 | − | 15.1 | 1.38 | |||||
pGBT66 | + | 0.21 | 31.4 | 0.032 | 59.6 | + | 0.81 | 14.7 | 0.34 | 4.3 |
− | 6.6 | 1.91 | − | 11.9 | 1.46 | |||||
pMZT37 | + | 0.23 | 22.6 | 0.025 | 78.8 | + | 0.93 | 12.7 | 0.25 | 3 |
− | 5.2 | 1.97 | − | 11.8 | 0.74 | |||||
pMZT38 | + | 0.22 | 31.3 | 0.02 | 112 | + | 0.8 | 14.4 | 0.23 | 5.04 |
− | 6.9 | 2.24 | − | 11.5 | 1.16 | |||||
pMZT39 | + | 0.29 | 19.3 | 0.025 | 96 | + | 0.99 | 13.9 | 0.43 | 3.6 |
− | 5.6 | 2.4 | − | 13.8 | 1.56 | |||||
pMZT14 | + | 0.009 | 38.9 | 0.0045 | 37.8 | + | 0.45 | 1.0 | 0.06 | 1.5 |
− | 0.35 | 0.17 | − | 0.45 | 0.09 | |||||
pMZT40 | + | 4.22 | 1.2 | 0.94 | 2.6 | + | 0.77 | 15.1 | 0.27 | 3.9 |
− | 5.0 | 2.45 | − | 11.6 | 1.05 | |||||
pMZT41 | + | 4.31 | 1.2 | 1.1 | 1.8 | + | 0.45 | 17 | 0.24 | 5.6 |
− | 5.1 | 2.01 | − | 7.64 | 1.34 | |||||
pMZT42 | + | 3.27 | 1.4 | 0.82 | 2.1 | + | 0.93 | 17.5 | 0.12 | 7.3 |
− | 4.6 | 1.74 | − | 16.3 | 0.84 |
Results come from at least three experiments. The RK2 DNA present in the reporter plasmids is shown in Fig. 3.
KorB was expressed by plasmid pDM1.21, while the expression vector pDM1.2 was used to replace it for the no-repressor control.
Repression ratio, calculated as XylE units with repressor/XylE units without repressor.
TrbA was expressed by plasmid pMZT24, while the expression vector pGBT30 was used to replace it for the no-repressor control.
For clarity, the standard deviation values, which were generally in the same range as shown in the other tables, were omitted.