Table 2.
A descriptive summary of significant variants associated with the RIR stripe pattern in GWAS.
| Chr. | Position (bp) | N_Sig a | Lead Variant b | p c | Genomic Location | Corresponding Genes |
|---|---|---|---|---|---|---|
| 1 | 41785264 | 1 | 41785264 | 7.83 × 10−6 | exon | TSPAN19 |
| 1 | 41799389–41889944 | 58 | 41847422 | 9.24 × 10−7 | intron; exon; downstream | ENSGALG00000044478 |
| 1 | 41892428 | 1 | 41892428 | 3.89 × 10−6 | Intergenic | ENSGALG00000044478-ALX1 |
| 1 | 41893987–41921738 | 18 | 41916556 | 1.06 × 10−7 | upstream; intron; exon; downstream | ALX1 |
| 1 | 41902222–41911298 | 7 | 41902973 | 3.89 × 10−6 | upstream; downstream | ENSGALG00000047575 |
| 1 | 41924948–42155127 | 180 | 42062678 | 1.57 × 10−7 | intergenic | ALX1-RASSF9 |
| 1 | 42156048–42190437 | 19 | 42156048 | 1.91 × 10−6 | upstream; exon; intron; downstream | RASSF9 |
| 1 | 42198934–42201800 | 3 | 42198934; 42200190 | 3.89 × 10−6 | intergenic | RASSF9-NTS |
| 1 | 42204316–42225096 | 13 | 42207440 | 9.81 × 10−7 | upstream; intron; downstream | NTS |
| 1 | 42226797–42241774 | 5 | 42232409 | 3.89 × 10−6 | intergenic | NTS-MGAT4C |
| 1 | 42247263–42362279 | 116 | 42305962; 42318478 | 2.25 × 10−7 | upstream; intron; downstream | MGAT4C |
| 1 | 42363559–42380754 | 11 | 42363559; 42372167 | 1.91 × 10−6 | intergenic | MGAT4C-ENSGALG00000045907 |
| 1 | 42387035–42392260 | 4 | 42387035 | 1.91 × 10−6 | upstream; downstream | ENSGALG00000045907 |
| 1 | 42395470–42402424 | 3 | 42402424 | 1.91 × 10−6 | intergenic | ENSGALG00000045907-ENSGALG00000053372 |
| 1 | 42417397–42483449 | 14 | 42466857 | 4.83 × 10−8 | exon; intron; upstream | ENSGALG00000053372 |
| 1 | 42484399–42808126 | 237 | 42484399 | 1.56 × 10−5 | intergenic | ENSGALG00000053372-C12orf50 |
| 1 | 42808720–42827406 | 22 | 42816606 | 1.91 × 10−6 | upstream; intron; exon; downstream | C12orf50 |
| 1 | 42828049–42836552 | 13 | 42835185 | 4.67 × 10−7 | upstream; intron; exon | C12orf29 |
| 1 | 42837178–42854277 | 17 | 42839207 | 4.73 × 10−7 | upstream; intron; exon | ENSGALG00000049176 |
| 1 | 42857947 | 1 | 42857947 | 2.14 × 10−5 | intergenic | ENSGALG00000049176-ENSGALG00000051263 |
| 1 | 42861965–42872432 | 10 | 42861965 | 9.24 × 10−7 | upstream; intron; downstream | ENSGALG00000051263 |
| 1 | 42872979–42883280 | 14 | 42877886 | 9.24 × 10−7 | exon; intron | ENSGALG00000011177 |
| 1 | 42884076–42950258 | 74 | 42905449; 42926288 | 9.24 × 10−7 | upstream; intron; exon; downstream | TMTC3 |
| 1 | 42953794–42977208 | 12 | 42973895 | 1.91 × 10−6 | intergenic | TMTC3-KITLG |
| 1 | 43028225–43047548 | 2 | 43047548 | 3.89 × 10−6 | intron | KITLG |
| 4 | 21698048 | 1 | 21698048 | 1.60 × 10−6 | intergenic | ENSGALG00000048717-GASK1B |
| 25 | 3002653 | 1 | 3002653 | 7.25 × 10−6 | upstream | KCNN3 |
a The number of significant variants with p < 3.07 × 10−5, b The SNP with the smallest p at the position, c The p of lead variant.