Table 2.
Gene contents of chloroplast genome in G. gandavensis.
| Category | Gene Group | Gene Contents |
|---|---|---|
| Photosynthesis | Subunits of photosystem I | psaA,psaB,psaC,psaI,psaJ |
| Subunits of photosystem II | psbA,psbB,psbC,psbD,psbE,psbF, psbH,psbI,psbJ,psbK,psbL,psbM,psbN,psbT,psbZ |
|
| Subunits of cytochrome b/f complex | petA,petB*,petD*,petG,petN | |
| Subunits of ATP synthase | atpA,atpB,atpE,atpF*,atpH,atpI | |
| Subunits of NADH-dehydrogenase | ndhA*,ndhB*(2),ndhC,ndhD,ndhE,ndhF,ndhG,ndhH, ndhI,ndhJ,ndhK |
|
| Subunit of rubisco rbcL | rbcL | |
| Self-replication | Small subunit of ribosome | rps11,rps12**(2),rps14,rps15,rps16*,rps18,rps19(2), rps2,rps3,rps4,rps7(2),rps8 |
| Large subunit of ribosome | rpl14,rpl16*,rpl2*(2),rpl20,rpl22,rpl23(2),rpl32,rpl33, rpl36 |
|
| DNA-dependent RNA polymerase | rpoA,rpoB,rpoC1*,rpoC2 | |
| Protease clpP | clpP | |
| Maturase | matK | |
| Envelope membrane protein cemA | cemA | |
| Translation initiation factor infA | infA | |
| Cytochrome c biogenesis ccsA | ccsA | |
| Subunit Acetyl-CoA-Carboxylate | accD | |
| Ribosomal RNAs | rrn16(2), rrn23(2), rrn4.5(2), rrn5(2) | |
| Transfer RNA | trnA-UGC*(2), trnC-GCA, trnD-GUC, trnE-UUC,trnF-GAA,trnG-GCC*,trnG-UCC, trnH-GUG(2),trnI-CAU(2),trnI-GAU*(2), trnK-UUU*,trnL-CAA(2),trnL-UAA*, trnL-UAG,trnM-CAU,trnN-GUU(2), trnP-UGG,trnQ-UUG,trnR-ACG(2), trnR-UCU,trnS-GCU,trnS-GGA,trnS-UGA, trnT-GGU,trnT-UGU,trnV-GAC(2),trnV-UAC*, trnW-CCA,trnY-GUA,trnfM-CAU |
|
| other genes | Maturase | matK |
| Protease | clpP** | |
| Envelope membrane protein | cemA | |
| Acetyl-CoA carboxylase | accD | |
| c-type cytochrome synthesis gene | ccsA | |
| Translation initiation factor | infA | |
| Genes of unknown function | Conserved open reading frames | ycf1, ycf2, ycf2-D2, ycf3, ycf4, |
*: one intron; **: two intron.