Table 1.
Details of all datasets used in this study.
Data Description | Data Location | Reference |
---|---|---|
Horvath ageing clock | Publication suppl. data | Horvath (2013) [19] |
Levine ageing clock | Publication suppl. Data | Levine et al. (2018) [24] |
Stubbs ageing clock | GEO: GSE93957/publication suppl. Data | Stubbs et al. (2017) [25] |
Meer ageing clock | GEO: GSE121141/publication suppl. Data) | Meer et al. (2018) [26] |
Petkovich ageing clock | GEO: GSE80672/publication suppl. Data) | Petkovich et al. (2017) [27] |
Human G4-seq (K+) | GEO: GSM3003539 | Marsico et al. (2019) [8] |
Mice G4-seq (K+) | GEO: GSM3003547 | Marsico et al. (2019) [8] |
TET1 (mouse ESCs) ChIP-Seq | GEO: GSE24841 | Williams et al. (2011) [25] |
TET2 (mouse ESCs) ChIP-seq | GEO: GSE41720 | Chen et al. (2013) [26] |
TET1 (human ESCs) ChIP-seq | GEO: GSE99346 | Verma et al. (2018) [27] |
DNMT1 (K562) ChIP-seq | GEO: GSE92213 | ENCODE [28] |
DNMT1 (HepG2) ChIP-seq | GEO: GSE170872 | ENCODE [28] |
DNMT3b (HepG2) ChIP-seq | GEO: GSE95953 | ENCODE [28] |
NHEK BG4-ChIP | GEO: GSE76688 | Hänsel-Hertsch et al. (2016) [9] |
HaCaT BG4-ChIP | GEO: GSE76688 | Hänsel-Hertsch et al. (2016) [9] |
K562 BG4-ChIP | GEO: GSE107690 | Mao et al. (2018) [15] |