Table 1.
Gene annotation of the S. saginoides and S. sessiliflora chloroplast genome.
| Category | Group | Genes |
|---|---|---|
| Photosynthesis related genes | Rubisco | rbcL |
| Photosystem I | psaA, psaB, psaC, psaI, psaJ | |
| Photosystem II | psbA, psbB, psbT, psbK, psbI, psbH, psbM, psbN, psbD, psbC, psbZ, psbJ, psbL, psbE, psbF | |
| ATP synthase | atpA, atpB, atpE, atpF a, atpH, atpI | |
| Cytochrome b/f complex | petA, petB a, petD, petN, petL, petG | |
| Cytochrome C synthesis | ccsA | |
| NADPH dehydrogenase | NdhA a, ndhB a,c (×2), ndhC, ndhD, ndhE, ndhF, ndhH, ndhG, ndhJ, ndhK, ndhI | |
| Transcription and translation related genes | Transcription | rpoA, rpoB, rpoC2, rpoC1 a |
| Ribosomal proteins | rps2, rps3, rps4, rps7 c (×2), rps8, rps11, rps12 b,c (×2), rps14, rps15, rps16 a, rps18, rps19, rpl2 a,c (×2), rpl14, rpl16 a, rpl20, rpl22, rpl23 c (×2), rpl32, rpl33, rpl36 | |
| Translation initiation factor | infA | |
| RNA genes | Ribosomal RNA | rrn16S c (×2), rrn23S c (×2), rrn4.5 c (×2), rrn5 c (×2) |
| Transfer RNA | trnH-GUG, trnK-UUU a, trnQ-UUG, trnS-GCU, trnS-UGA, trnS-GGA, trnG-GCC a, trnR-UCU, trnR-ACG c (×2), trnC-GCA, trnD-GUC, trnY-GUA, trnE-UUC, trnT-UGU, trnG-UCC, trnfM-CAU, trnL-CAA c (×2), trnL-UAA a, trnL-UAG, trnF-GAA, trnV-GAC c (×2), trnV-UAC a, trnM-CAU, trnT-GGU, trnW-CCA, trnP-UGG, trnI-CAU c (×2), trnI-GAU a,c (×2), trnA-UGC a,c (×2), trnN-GUU c (×2) | |
| Other genes | RNA processing | matK |
| Carbon metabolism | cemA | |
| Fatty acid synthesis | accD | |
| Proteolysis | ClpP b | |
| Conserved ORFs | ycf1, ycf2 c (×2), ycf3 b, ycf4 |
a genes with one intron, b genes with two introns, c two gene copies in IRs.