Table 3.
Secondary structure for GUS proteins of bacteria predicted using SOPMA tool.
| Probiotics | α Helix (%) | Extended Strand (%) | β Turn (%) | Random Coil (%) |
|---|---|---|---|---|
| Normal tissue associated bacteria | ||||
| L. rhamnosus | 26.37 | 23.55 | 7.13 | 42.95 |
| R. intestinalis | 27.33 | 22.67 | 6.50 | 43.50 |
| C. comes | 23.02 | 25.91 | 8.30 | 42.77 |
| F. prausnitzii 1 | 27.42 | 22.74 | 6.69 | 43.14 |
| F. prausnitzii 2 | 26.15 | 22.04 | 6.25 | 45.56 |
| F. prausnitzii 3 | 23.32 | 25.82 | 8.29 | 42.57 |
| P. acnes | 26.60 | 24.75 | 6.90 | 41.75 |
| Breast cancer patients associated bacteria | ||||
| M. bacterium | 26.45 | 23.21 | 6.31 | 44.03 |
| S. xylosus | 26.80 | 23.95 | 6.87 | 42.38 |
| S. suis | 26.88 | 22.37 | 6.84 | 43.91 |
| Bacillus sp. M4U3P1 | 27.32 | 22.52 | 6.62 | 43.54 |
| E. coli (strain K12) | 25.70 | 23.88 | 7.13 | 43.28 |
| S. aquatilis NBRC 16722 | 22.66 | 24.25 | 5.39 | 47.70 |
| C. amalonaticus | 26.79 | 24.13 | 5.49 | 43.59 |
| E. gallinarum 1 | 25.17 | 23.49 | 6.21 | 45.13 |
| E. gallinarum 2 | 27.24 | 23.59 | 7.14 | 42.03 |
| S. enterica | 26.37 | 24.21 | 6.63 | 42.79 |
| S. caeli | 27.81 | 23.62 | 6.70 | 41.88 |
| S. haemolyticus | 26.46 | 24.13 | 6.99 | 42.43 |