Table 4.
Relevance score, druggability, bottleneck radius, length and curvature of catalytic sites tunnels determined in present study bacteria using Caver Web tool.
Bacteria | Relevance Score (%) |
Druggability | Bottleneck Radius (Angstrom) |
Length (Angstrom) | Curvature |
---|---|---|---|---|---|
Normal tissue associated microbiota | |||||
L. rhamnosus | 100 | 0.14 | 2.3 | 1.4 | 1.1 |
R. intestinalis | 100 | 0.17 | 1.6 | 4.3 | 1.2 |
C. comes | 100 | 0.28 | 1.9 | 2.7 | 1.3 |
F. prausnitzii 1 | 100 | 0.07 | 2.1 | 2.5 | 1.0 |
F. prausnitzii 2 | 100 | 0.07 | 1.6 | 8.8 | 1.1 |
F. prausnitzii 3 | 100 | 0.05 | 1.2 | 10.7 | 1.4 |
P. acnes | 100 | 0.45 | 1.2 | 10.7 | 1.4 |
Breast cancer patients associated bacteria | |||||
Methylococcaceae bacterium |
100 | 0.80 | 2.3 | 6.9 | 1.1 |
S. xylosus | 100 | 0.60 | 2.0 | 5.7 | 1.1 |
S. suis | 100 | 0.07 | 2.1 | 1.5 | 1.0 |
Bacillus sp. M4U3P1 | 100 | 0.07 | 2.2 | 4.4 | 1.2 |
E. coli (strain K12) | 100 | 0.06 | 2.2 | 1.9 | 1.2 |
S. aquatilis NBRC 16722 |
100 | 0.06 | 1.1 | 8.7 | 0.65 |
C. amalonaticus | 100 | 0.14 | 1.3 | 14.6 | 1.2 |
E. gallinarum 1 | 100 | 0.13 | 1.2 | 15.9 | 1.3 |
E. gallinarum 2 | 100 | 0.23 | 2.8 | 2.0 | 1.2 |
S. enterica | 100 | 0.51 | 2.5 | 1.5 | 1.0 |
S. caeli | 100 | 0.39 | 2.3 | 4.0 | 1.1 |
S. haemolyticus | 100 | 0.52 | 1.9 | 3.4 | 1.0 |