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. 2022 Sep 12;18(9):e1010492. doi: 10.1371/journal.pcbi.1010492

Fig 6. Normalization followed by two rounds of dimensionality reduction introduce distortions in the local neighborhoods.

Fig 6

a.d. Histograms of Jaccard distances between intermediate embeddings. e. Empirical cumulative distribution functions of Jaccard distances between intermediate embeddings, as well as the overall distortion (Ambient vs. PCA 2 and Ambient vs. tSNE 2). The palette used is derived from dutchmasters by EdwinTh.