Table 1. Unique peptides of novel AdV ORFs detected by mass spectrometry.
Specific detected viral peptides are listed along with their amino acid number in brackets. PSM, peptide spectral match within whole cell proteome. PRM Detection, parallel reaction monitoring run performed. PF/TF, peptide fragments/total possible peptide fragments detected by PRM.
| Protein Name | Peptide | PSM | q-Value | PRM Detection | PF/TF |
|---|---|---|---|---|---|
| E1B-19K/IX | [57–81] SCAAAAAMSTNSFDGSIVSSYLTTR | Nd | Yes | 20/25 | |
| MLi | [1–23] MRADREELDLPPPIGGVAIDVVK | 15 | 2.37E-05 | ||
| [3–23] ADREELDLPPPIGGVAIDVVK | 187 | 2.37E-05 | |||
| [3–31] ADREELDLPPPIGGVAIDVVKVEVPATGR | 24 | 2.37E-05 | |||
| [6–23] EELDLPPPIGGVAIDVVK | 35 | 8.26E-05 | |||
| [24–31] VEVPATGR | 74 | 0.000167147 | |||
| [32–39] TLVLAFVK | 46 | 0.000139108 | |||
| [40–63] TCAVLAAVHGLYILHEVDLTTAHK | 110 | 2.37E-05 | |||
| [64–75] EAEWEFEPLAWR | 12 | 2.37E-05 | |||
| [107–113] AQSPDVR | 47 | 0.000433765 | |||
| [116–136] RSELDDNIAQMGAVHGLELPR | 71 | 2.37E-05 | |||
| [116–137] RSELDDNIAQMGAVHGLELPRR | 3 | 2.37E-05 | |||
| [117–136] SELDDNIAQMGAVHGLELPR | 53 | 2.37E-05 | |||
| C168 | [120–134] DLSESASTGSENLSR | 2 | 0.000783189 | ||
| L1-6K | [1–16] MYLDIQVMPAAVVEAR | 1 | 0.00836917 | ||
| L2-111R | [77–93] SLWFLQIWPSPAASVSR | 4 | 8.26E-05 | ||
| [94–111] CRDSEEECTVGGAWPATA | 6 | 2.37E-05 | No | ||
| L3-51R | [38–47] EASNINNSCR | 2 | 0.00530179 | ||
| L4-100Ktr3 | [60–81] SVPTEDKKQDQDNAEPYQQQPR | 8 | 2.37E-05 | ||
| [67–81] KQDQDNAEPYQQQPR | 10 | 2.37E-05 | |||
| [68–81] QDQDNAEPYQQQPR | 8 | 2.37E-05 | No | ||
| L4-100Ktr4 | [155–172] LNFYPVFAVPEPYQQQPR | 20 | 2.37E-05 | Yes | 13/18 |
| MLi-100K | [137–145] RQPYQQQPR | 16 | 8.26E-05 | ||
| L4-100K-33K | [93–98] GPLLPR | 13 | 0.00496589 | Yes | 3/6 |
| E4-Unk | [94–106] SSAKPPPSADAVR | 3 | 0.00343938 | ||
| E4orf6/DBP | [39–60] ATILEDHPLLPECNTLTMHNEK | Nd | Yes | 17/22 |