Figure 4.

Aggregated protein reproducibility ranks partially explains the variable mRNA-protein correlation in 10 additional studies

(A–J) For studies without experimental proteomic replicates, boxplots showing the distributions of mRNA-protein correlation for proteins in each decile of the aggregated protein reproducibility ranks. (A)–(H) are the CPTAC tumor studies; (I) is the NCI-60 cancer cell lines study wherein protein quantification, used for computing the mRNA-protein correlation, is obtained from data-independent acquisition-based untargeted proteomics (SWATH-MS); and (J) is the healthy tissues study from the GTEx Consortium. Box plot details as in Figure 2.