Table 3.
MsigDB collection | Gene set name | NES | NOM p-val | FDR q-val |
---|---|---|---|---|
c2.cgp.v6.2.symbols.gmt | FARMER_BREAST_CANCER_CLUSTER_2 | 2.270 | 0.000 | 0.000 |
c2.cp.kegg.v6.2.symbols.gmt | KEGG_CELL_CYCLE | 1.819 | 0.003 | 0.002 |
KEGG_DNA_REPLICATION | 1.796 | 0.003 | 0.001 | |
KEGG_HOMOLOGOUS_RECOMBINATION | 1.688 | 0.027 | 0.007 | |
h.all.v6.0.symbols.gmt | HALLMARK_E2F_TARGETS | 2.060 | 0.000 | 0.000 |
HALLMARK_G2M_CHECKPOINT | 1.998 | 0.000 | 0.000 | |
HALLMARK_MITOTIC_SPINDLE | 1.674 | 0.000 | 0.000 | |
HALLMARK_MYC_TARGETS_V1 | 1.532 | 0.000 | 0.002 |
NES, normalized enrichment score; NOM, nominal; FDR, false discovery rate.