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. 2021 May 24;37(22):4100–4107. doi: 10.1093/bioinformatics/btab404

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© The Author(s) 2021. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 2. — A cheat sheet of the tidyverse functionalities that tidyseurat enables for Seurat objects. This cheat sheet provides examples of the alternative tidyverse and Seurat syntax. The green colour scheme includes procedures that output a tidyseurat, if: (i) do not lead cell duplication; and (ii) key columns (e.g. cell identifier) are not excluded, modified, nor renamed (e.g. through a select, mutate and rename commands). In this case, a table (rather than an abstraction) is returned for independent analysis and visualization. The blue colour scheme includes procedures that return tibble tables for independent analyses and plotting. The grey-shaded boxes include the alternative code utilizing Seurat and base-R.