Fig. 2.

Phylogenomic analysis of the Endozoicomonadaceae family using the speciesTreeBuilder v.01.0. Evolutionary history was inferred by using a maximum likelihood method (FastTree 2) based on alignment similarity of a set of 49 cores, universal genes defined by Clusters of Orthologous Groups of proteins (COG) gene families. Gray dots on the branches indicate bootstrap support of > 70%. Black triangles indicate a MAG, white triangles a SAG, and the remaining genomes were from isolates. The 11 Endozoicomonadaceae MAGs of this study are highlighted in bold-italics. All other Endozoicomonadaceae genomes (n = 29) were publicly available on RAST, IMG, or NCBI. Assembly accession numbers are given next to the strain names. Five Hahella spp. genomes of the closely related Hahellaceae family were used as outgroup to root the tree. The colored bar next to the tree shows the isolation source of the genomes. Note that all Endozoicomonadaceae genomes (including MAGs and SAGs) are derived from the microbiomes of marine animals, mainly marine invertebrates. The tree is drawn to scale and was style edited in iTOL