| ABS/RC | The absorption flux per reaction center |
| DEG | Differentially expressed genes |
| DIO/RC | The dissipated energy flux per reaction center |
| ETO/RC | The electron transport flux per reaction center |
| FO (O) | Basal (initial) level of chlorophyll a fluorescence at 20 μs |
| FM (P) | Maximal level of chlorophyll a fluorescence |
| Fv/FM | The maximum quantum yield of primary photochemistry |
| GO | Gene Ontology |
| IC | Inhibition concentration |
| KO | KEGG Orthology |
| LHC | The light-harvesting chlorophyll protein complex |
| M O | The slope at the origin of the relative variable fluorescence) |
| n | The number of QA reduction events between time 0 to tP) |
| OEC | The oxygen evolving center |
| PCA | Principal component analysis |
| PS | Photosystem |
| Q A | The first quinone electron acceptor of Photosystem II |
| Q B | The second quinone electron acceptor of Photosystem II |
| RC | Reaction center |
| S m | The working integral of the energy needed to close all reaction centers) |
| TC | Tetracycline |
| TRO/RC | The trapped energy flux per reaction center |