HPV	Human Papillomavirus
HNSCC	head and neck squamous cell carcinoma
pRb	Retinoblastoma protein
PCNA	proliferating cell nuclear antigen
TNFRSF14	Tumor Necrosis Factor (TNF) Receptor Superfamily Member 14
TRAF1	TNF Receptor Associated Factor 1
TRAF2	TNF Receptor Associated Factor 2
BCL2	B-cell lymphoma 2 apoptosis regulator
BIRC3	Baculoviral Inhibitor of Apoptosis (IAP) Repeat Containing 3
SYCP2	Synaptonemal Complex Protein 2
TAF7L	TATA-Box Binding Protein Associated Factor 7-Like
E6	HPV early gene 6
E7	HPV early gene 7
TP53/p53	tumor suppressor gene/protein p53
HPVN	HPV negative HNSCC
HPVP	HPV positive HNSCC
p16	cyclin-dependent kinase inhibitor
CCND1	cyclin D1
TCGA	The Cancer Genome Atlas
GDC	NCI Genomic Data Commons
PCA	Principal Component Analysis
DGE	differential gene expression
DMA	differential methylation analysis
DMR	differential methylated regions
GPX2	Glutathione peroxidase 2
KRTDAP	Keratinocyte Differentiation Associated Protein
CRNN	Cornulin
PCA	Principal component analysis
KEGG	Kyoto Encyclopedia of Genes and Genomes
ECM	extracellular matrix
PANTHER	protein annotation through evolutionary relationship
THPA	The Human Protein Atlas
TLR	Toll-like receptor
NLR	Nod-like receptor
NF-kβ	nuclear factor kappa-light-chain-enhancer of activated B cells
ZFR2	Zinc Finger RNA Binding Protein 2
INHBA	Inhibin Subunit Beta A