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. 2022 Sep 23;8(38):eabq0304. doi: 10.1126/sciadv.abq0304

Table 1. Genome assembly statistics of A. loripes compared to other sequenced Acropora species used in this study.

Parameter Acropora loripes (this study) Acropora digitifera (4) Acropora tenuis (62) Acropora millepora (64)
Assembly size of scaffolds (Mb) 401.87 447.49 486.81 386.60
Assembly size of contigs (Mb) 401.86 379.28 486.81 349.00
Number of scaffolds/contigs 335/398 2,421/54,033 614/614 3,869/20,440
Scaffold N50 2.82 Mb 483.55 kb 2.83 Mb 494.53 kb
Contig N50 2.35 Mb 11.00 kb 2.83 Mb 36.67 kb
Repetitive elements (%) 43.13 30.99* 43.39* 34.55
GC content (%) 38.99 39.04 39.07 38.85
Gap content (Ns) (%) 0.002 15.24 0 9.72
Number of predicted genes 27,152 33,865 30,327 26,615
Completeness by BUSCO
(Metazoa) C:F:M (%)
96.1:1.7:2.2 77.5:10.2:12.3 88.6:4.8:6.6 88.0:6.5:5.5

*Values generated by de novo masking genomes from other studies.

†Percentages of complete, fragmented, and missing BUSCO genes on predicted proteins per genome against the Metazoa v.10 dataset.