Table 1. Genome assembly statistics of A. loripes compared to other sequenced Acropora species used in this study.
Parameter | Acropora loripes (this study) | Acropora digitifera (4) | Acropora tenuis (62) | Acropora millepora (64) |
Assembly size of scaffolds (Mb) | 401.87 | 447.49 | 486.81 | 386.60 |
Assembly size of contigs (Mb) | 401.86 | 379.28 | 486.81 | 349.00 |
Number of scaffolds/contigs | 335/398 | 2,421/54,033 | 614/614 | 3,869/20,440 |
Scaffold N50 | 2.82 Mb | 483.55 kb | 2.83 Mb | 494.53 kb |
Contig N50 | 2.35 Mb | 11.00 kb | 2.83 Mb | 36.67 kb |
Repetitive elements (%) | 43.13 | 30.99* | 43.39* | 34.55 |
GC content (%) | 38.99 | 39.04 | 39.07 | 38.85 |
Gap content (Ns) (%) | 0.002 | 15.24 | 0 | 9.72 |
Number of predicted genes | 27,152 | 33,865 | 30,327 | 26,615 |
Completeness by BUSCO (Metazoa) C:F:M (%)† |
96.1:1.7:2.2 | 77.5:10.2:12.3 | 88.6:4.8:6.6 | 88.0:6.5:5.5 |
*Values generated by de novo masking genomes from other studies.
†Percentages of complete, fragmented, and missing BUSCO genes on predicted proteins per genome against the Metazoa v.10 dataset.