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. 2022 Sep 24;54:65. doi: 10.1186/s12711-022-00756-0

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© The Author(s) 2022

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 3 — Effect of training set size on the genomic prediction accuracy for each set of preselected WGS variants in the three largest lines. The difference between each set of preselected WGS variants (Top40k, ChipPlusSign, and ChipPlusSign*) and the marker array (Chip) is shown. Red dashed line at ‘no difference’. Regression coefficient (b) and p-value of training set size is provided, as well as the coefficient of determination (R²) of the model. Results for traits ADG, BFT, and LD were jointly analysed, and the linear model included the trait effect (panels a to c) or the trait and line effects (panel d)