Supplementary Figure S2.

A compendium of the sequencing data of the in situ Hi-C libraries A. Correlation between the biological replicates of the 2D-cultured cells (SCC = 0.98). B. Correlation between the biological replicates of the 3D-cultured cells (SCC = 0.97). C. Heatmap showing the pairwise SCC correlations between all samples of the 2D- and 3D-cultured cells. D. PCA of the individual biological replicates of the 2D- and 3D-cultured cells. The percentages along each axis reflect the fraction of the variances. E. and F. The whole genome chromatin contact maps showing inter-chromosomal contacts of the 2D-cultured (E) and 3D-cultured (F) cells. PCA, principal component analysis.