Table 1.
Frequencies and percentages of total and unique S, E, M, N, ORF3a, ORF6, ORF7a, ORF7b, ORF8, and ORF10 protein sequences in SARS-CoV-2 from 24 different geo-locations.
| Geo-locations | S |
E |
M |
N |
ORF3a |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | Unique | % | Total | Unique | % | Total | Unique | % | Total | Unique | % | Total | Unique | % | |
| Australia | 9919 | 1121 | 11.302 | 9919 | 38 | 0.3831 | 9919 | 38 | 0.3831 | 9919 | 213 | 2.147 | 9919 | 19 | 0.192 |
| Austria | 97 | 26 | 26.804 | 97 | 2 | 2.0619 | 97 | 2 | 2.0619 | 97 | 22 | 22.680 | 97 | 3 | 3.093 |
| Bahrain | 167 | 56 | 33.533 | 167 | 4 | 2.3952 | 167 | 4 | 2.3952 | 167 | 33 | 19.760 | 167 | 7 | 4.192 |
| Bangladesh | 402 | 98 | 24.378 | 402 | 11 | 2.7363 | 402 | 11 | 2.7363 | 402 | 53 | 13.184 | 402 | 9 | 2.239 |
| California | 15,616 | 3321 | 21.267 | 15,744 | 192 | 1.2195 | 15,744 | 192 | 1.2195 | 15,616 | 1345 | 8.613 | 15,615 | 104 | 0.666 |
| Chile | 290 | 25 | 8.621 | 290 | 2 | 0.6897 | 290 | 2 | 0.6897 | 290 | 16 | 5.517 | 290 | 3 | 1.034 |
| Egypt | 700 | 183 | 26.143 | 700 | 22 | 3.1429 | 700 | 22 | 3.1429 | 700 | 116 | 16.571 | 700 | 10 | 1.429 |
| Florida | 17,180 | 2527 | 14.709 | 17,324 | 131 | 0.7562 | 17,324 | 131 | 0.7562 | 17,180 | 973 | 5.664 | 17,178 | 65 | 0.378 |
| France | 90 | 19 | 21.111 | 90 | 4 | 4.4444 | 90 | 4 | 4.4444 | 90 | 6 | 6.667 | 90 | 3 | 3.333 |
| Ghana | 167 | 65 | 38.922 | 167 | 7 | 4.1916 | 167 | 7 | 4.1916 | 167 | 41 | 24.551 | 167 | 10 | 5.988 |
| Greece | 97 | 11 | 11.340 | 97 | 3 | 3.0928 | 97 | 3 | 3.0928 | 97 | 9 | 9.278 | 97 | 2 | 2.062 |
| Hong Kong | 228 | 48 | 21.053 | 230 | 5 | 2.1739 | 230 | 5 | 2.1739 | 228 | 28 | 12.281 | 228 | 3 | 1.316 |
| India | 813 | 178 | 21.894 | 830 | 20 | 2.4096 | 830 | 20 | 2.4096 | 813 | 86 | 10.578 | 813 | 7 | 0.861 |
| Massachusetts | 8856 | 1281 | 14.465 | 9045 | 92 | 1.0171 | 9045 | 92 | 1.0171 | 8856 | 625 | 7.057 | 8856 | 47 | 0.531 |
| Michigan | 9930 | 1297 | 13.061 | 9998 | 78 | 0.7802 | 9998 | 78 | 0.7802 | 9930 | 418 | 4.209 | 9930 | 38 | 0.383 |
| Minnesota | 13,046 | 2658 | 20.374 | 13,621 | 77 | 0.5653 | 13,621 | 77 | 0.5653 | 13,046 | 481 | 3.687 | 13,044 | 45 | 0.345 |
| Pakistan | 214 | 49 | 22.897 | 214 | 7 | 3.2710 | 214 | 7 | 3.2710 | 214 | 33 | 15.421 | 214 | 5 | 2.336 |
| Pennsylvania | 8779 | 1343 | 15.298 | 8913 | 105 | 1.1781 | 8913 | 105 | 1.1781 | 8779 | 643 | 7.324 | 8779 | 52 | 0.592 |
| Peru | 116 | 44 | 37.931 | 116 | 8 | 6.8966 | 116 | 8 | 6.8966 | 116 | 19 | 16.379 | 116 | 2 | 1.724 |
| Poland | 153 | 26 | 16.993 | 153 | 2 | 1.3072 | 153 | 2 | 1.3072 | 153 | 22 | 14.379 | 153 | 1 | 0.654 |
| Serbia | 146 | 23 | 15.753 | 146 | 3 | 2.0548 | 146 | 3 | 2.0548 | 146 | 22 | 15.068 | 145 | 1 | 0.690 |
| Spain | 134 | 36 | 26.866 | 134 | 4 | 2.9851 | 134 | 4 | 2.9851 | 134 | 21 | 15.672 | 134 | 3 | 2.239 |
| Texas | 9251 | 1546 | 16.712 | 9431 | 101 | 1.0709 | 9431 | 101 | 1.0709 | 9251 | 644 | 6.961 | 9251 | 61 | 0.659 |
| Tunisia | 58 | 30 | 51.724 | 58 | 3 | 5.1724 | 58 | 3 | 5.1724 | 58 | 22 | 37.931 | 57 | 1 | 1.754 |
| Geo-locations | ORF6 |
ORF7a |
OR7b |
ORF8 |
ORF10 |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | Unique | % | Total | Unique | % | Total | Unique | % | Total | Unique | % | Total | Unique | % | |
| Australia | 9919 | 19 | 0.192 | 9919 | 58 | 0.585 | 9919 | 14 | 0.141 | 9919 | 54 | 0.544 | 9919 | 16 | 0.161 |
| Austria | 97 | 3 | 3.093 | 97 | 5 | 5.155 | 95 | 2 | 2.105 | 26 | 3 | 11.538 | 97 | 2 | 2.062 |
| Bahrain | 167 | 7 | 4.192 | 167 | 18 | 10.778 | 167 | 4 | 2.395 | 145 | 17 | 11.724 | 167 | 3 | 1.796 |
| Bangladesh | 402 | 9 | 2.239 | 402 | 15 | 3.731 | 400 | 6 | 1.500 | 397 | 19 | 4.786 | 402 | 11 | 2.736 |
| California | 15,615 | 104 | 0.666 | 15,612 | 330 | 2.114 | 15,724 | 89 | 0.566 | 12,945 | 359 | 2.773 | 15,739 | 61 | 0.388 |
| Chile | 290 | 3 | 1.034 | 290 | 5 | 1.724 | 290 | 2 | 0.690 | 290 | 5 | 1.724 | 290 | 1 | 0.345 |
| Egypt | 700 | 10 | 1.429 | 700 | 20 | 2.857 | 700 | 11 | 1.571 | 697 | 34 | 4.878 | 700 | 8 | 1.143 |
| Florida | 17,178 | 65 | 0.378 | 17,161 | 314 | 1.830 | 17,305 | 63 | 0.364 | 7948 | 231 | 2.906 | 17,322 | 47 | 0.271 |
| France | 90 | 3 | 3.333 | 90 | 1 | 1.111 | 90 | 1 | 1.111 | 90 | 3 | 3.333 | 90 | 1 | 1.111 |
| Ghana | 167 | 10 | 5.988 | 167 | 10 | 5.988 | 167 | 7 | 4.192 | 69 | 12 | 17.391 | 167 | 3 | 1.796 |
| Greece | 97 | 2 | 2.062 | 96 | 2 | 2.083 | 97 | 1 | 1.031 | 97 | 4 | 4.124 | 97 | 1 | 1.031 |
| Hong Kong | 228 | 3 | 1.316 | 230 | 5 | 2.174 | 230 | 2 | 0.870 | 212 | 10 | 4.717 | 230 | 3 | 1.304 |
| India | 813 | 7 | 0.861 | 828 | 23 | 2.778 | 828 | 7 | 0.845 | 798 | 27 | 3.383 | 830 | 3 | 0.361 |
| Massachusetts | 8856 | 47 | 0.531 | 8853 | 184 | 2.078 | 9044 | 46 | 0.509 | 5264 | 137 | 2.603 | 9044 | 29 | 0.321 |
| Michigan | 9930 | 38 | 0.383 | 9927 | 199 | 2.005 | 9998 | 45 | 0.450 | 3061 | 77 | 2.516 | 9998 | 23 | 0.230 |
| Minnesota | 13,044 | 45 | 0.345 | 13,029 | 758 | 5.818 | 13,600 | 59 | 0.434 | 4619 | 118 | 2.555 | 13,608 | 29 | 0.213 |
| Pakistan | 214 | 5 | 2.336 | 212 | 6 | 2.830 | 206 | 2 | 0.971 | 208 | 10 | 4.808 | 212 | 3 | 1.415 |
| Pennsylvania | 8779 | 52 | 0.592 | 8779 | 202 | 2.301 | 8913 | 38 | 0.426 | 4564 | 135 | 2.958 | 8913 | 29 | 0.325 |
| Peru | 116 | 2 | 1.724 | 116 | 9 | 7.759 | 116 | 1 | 0.862 | 115 | 8 | 6.957 | 116 | 5 | 4.310 |
| Poland | 153 | 1 | 0.654 | 152 | 8 | 5.263 | 153 | 2 | 1.307 | 149 | 6 | 4.027 | 153 | 2 | 1.307 |
| Serbia | 145 | 1 | 0.690 | 146 | 3 | 2.055 | 146 | 1 | 0.685 | 146 | 6 | 4.110 | 146 | 2 | 1.370 |
| Spain | 134 | 3 | 2.239 | 134 | 2 | 1.493 | 130 | 2 | 1.538 | 62 | 3 | 4.839 | 134 | 3 | 2.239 |
| Texas | 9251 | 61 | 0.659 | 9251 | 190 | 2.054 | 9430 | 43 | 0.456 | 4626 | 154 | 3.329 | 9430 | 39 | 0.414 |
| Tunisia | 57 | 1 | 1.754 | 58 | 7 | 12.069 | 58 | 2 | 3.448 | 56 | 7 | 12.500 | 57 | 4 | 7.018 |