TABLE 1.
Linear plasmid pCLP gene analysis
| ORF no.a | Predicted protein size (aa) | Identity (%) | Closest homolog (species and strain or plasmid) | Known or putative function | Accession no. |
|---|---|---|---|---|---|
| 1 | 424 | 86 | Rv3128c (M. tuberculosis H37Rv) | Unknown | C70990 |
| 2 | 98 | 70 | pemI (M. morganii R446b) | Maintenance | AAC82515 |
| 71 | pemI (E. coli R100) | Maintenance | BAA78897 | ||
| 3 | 84 | 87 | pemK (M. morganii R446b) | Maintenance | AAC82516 |
| 86 | pemK (E. coli R100) | Maintenance | BAA78898 | ||
| 8 | 271 | 80 | Rv2813 (M. tuberculosis H37Rv) | Secretion | H70690 |
| 9b | 318 | 86 | Rv2812 (M. tuberculosis H37Rv) | Transposase (IS1604) | G70690 |
| 11 | 215 | 57 | parA (P. alcaligenes) | Partition | AAD40334 |
| 14 | 351 | 65 | rep (M. fortuitum) | Replication | CAB43095 |
| 16 | 195 | 71 | Rv0921 (M. tuberculosis H37Rv) | Resolvase (IS1535) | A70583 |
| 63 | Rv2792c (M. tuberculosis H37Rv) | Resolvase (IS1602) | G70884 | ||
| 17 | 486 | 58 | Rv0922 (M. tuberculosis H37Rv) | Transposase (IS1535) | B70583 |
| 53 | Rv2791c (M. tuberculosis H37Rv) | Transposase (IS1602) | F70884 |
a
ORF4 to -7, -10, -12, -13, -15, -18, and -19 have no significant similarities in the databases.
b
No valid start codon.