Table 1.
Classification of CRISPR/Cas system with their protein, target molecule, mechanism of spacer acquisition, processing of Pre-CRISPR, self-vs non-self-discrimination and their effectors with the name of isolated organism with references
Class | Type | Protein | Target | Spacer acquisition strategy | Name of CRISPR/Cas system | Pre-CRISPR processing | Self vs nonself-discrimination | Effectors of CRISPR system | Host organism | References |
---|---|---|---|---|---|---|---|---|---|---|
Class1 | I | Cas3 | ssDNA | Cas1/Cas2/ Cas4 | Cas7, Cas5, Cas8, and Cas3 | Cas6 | PAM | Cas3, Cascade, and crRNA | E. coli | [23] |
III | Cas10 | ssDNA | Cas1/Cas2 | Cas7, Cas5, and Cas1 | Cas6 | CRISPR repeat | Cmr/Csm, crRNA, and Cas10 | S. epidermics | [24] | |
IV | Csf1 | – | NA | Cas7, Cas5, and Csf1 | – | – | – | – | [21] | |
Class2 | II | Cas9 | dsDNA | Cas1/Cas2/ Cas4 | Cas9 | RNase III, and tracrRNA | PAM | Cas9, tracrRNA, and crRNA | S. thermophilus and S. pyogenes | [8] |
V | Cpf1 | ssDNA and dsDNA | Cas1/Cas2/ Cas4 | Cas12 | Cpf1 | PAM | Cpf1, crRNA and tracrRNA | F. novicida | [25] | |
VI | C2c2 | ssRNA | Cas1/Cas2 | Cas13 | – | – | C2c1, and crRNA | – | [26] |