Antibodies |
|
HA Tag Polyclonal Antibody |
IGBMC antibody Facility |
Rabbit Polyclonal |
FLAG Tag Monoclonal Antibody |
IGBMC antibody Facility |
Mouse Monoclonal |
|
Bacterial and virus strains |
|
Escherichia coli: OP50 |
Caenorhabditis Genetics Center |
OP50 |
Escherichia coli: HT115(DE3) |
Caenorhabditis Genetics Center |
HT115(DE3) |
Escherichia coli: DH10β |
Invitrogen™ |
DH10β |
Escherichia coli: BL21(DE3) |
Stratagene |
BL21(DE3) |
|
Chemicals, peptides, and recombinant proteins |
|
Proteinase K from Tricachium album
|
Sigma-Aldrich |
Cat#: P2308 |
Ampicillin |
Sigma-Aldrich |
N/A |
IPTG |
GoldBio |
Cat#: I2481C |
KH2PO4 |
Sigma-Aldrich |
Cat#: P0662 |
Na2HPO4 |
Thermo Fisher Scientific |
Cat#: S374-3 |
NaCl |
Thermo Fisher Scientific |
Cat#: S271-3 |
MgSO4 |
Sigma-Aldrich |
Cat#: M7506 |
cOmplete Mini, EDTA-free Protease Inhibitor Cocktail |
Millipore Sigma |
Cat#: 11836170001 |
Tetramisole hydrochloride |
Sigma-Aldrich |
Cat#: L9756-5G |
Tricaine |
Sigma-Aldrich |
Cat#: E10521-10G |
NaOH |
Sigma-Aldrich |
|
NaCl |
Sigma-Aldrich |
|
Tris pH8 |
Sigma-Aldrich |
|
EDTA |
Sigma-Aldrich |
|
Dithiothreitol (DTT) |
ThermoFisher Scientific |
Cat#: R0861 |
|
Critical commercial assays |
|
Taq DNA Polymerase, 5 U/μL |
Roche |
11 435 094 001 |
Master Mix Phusion |
New England Biolabs |
M0531L |
Q5® Site-Directed Mutagenesis Kit |
New England Biolabs |
E0554S |
T4 DNA Ligase |
New England Biolabs |
M0202 |
mMESSAGE mMACHINE™ T7 Transcription Kit |
Invitrogen™ |
AM1344 |
NucleoSpin® Gel and PCR Clean-up |
Macherey-Nagel |
740609.50 |
NucleoSpin® Plasmid |
Macherey-Nagel |
740588.50 |
NucleoBond® Xtra Midi |
Macherey-Nagel |
740410.50 |
Hitrap Ni crude 1 mL columns |
Dutscher |
17-5247-01 |
NGM agar plates |
N/A |
N/A |
LB agar plates |
N/A |
N/A |
LB |
N/A |
N/A |
|
Experimental models: Organisms/strains |
|
C. elegans strains: See Table S2
|
|
|
|
Oligonucleotides |
|
Oligonucleotides: See Table S3
|
Sigma-Aldrich |
|
|
Recombinant DNA |
|
CloneJET PCR Cloning Kit |
Thermo Fisher Scientific |
K1231 |
pET30a+ |
Novagen |
pET30a+ |
pET32a+ |
Novagen |
pET32a+ |
pPD95.75 |
Fire Kit, Addgene |
pPD95.75 |
pPD97.82 |
Fire Kit, Addgene |
pPD97.82 |
pPD122.53 |
Fire Kit, Addgene |
pPD122.53 |
pOD1988 |
Wang et al., 2017 |
pOD1988 |
2nls::gfp |
This study |
pSJ553 |
egl-5p(6.5 kb)::nanobodyGFP::zif-1. |
This study |
pSJ559 |
lin-17p::2nls::gfp. |
This study |
pSJ567 |
lim-6(int4)::gfp |
This study |
pSJ739 |
lim-6int4(mutated)::gfp. |
This study |
pSJ759 |
let-413a::gfp::pest |
This study |
pSJ721.14 |
lin-26p::gfp |
This study |
pSJ722 |
T7p::6XHis::hmg-pop-1 |
This study |
pSJ769 |
T7p::6XHis::sox-2 full::HA |
This study |
pSJ6094 |
T7p::6XHis::hmg-pop-1::Flag |
This study |
pSJ1107 |
col-34p::gfp::cki-1(gDNA)::unc-54 3′utr |
This study |
pSJ1108 |
col-34p::gfp::cki-1(cDNA)::unc-54 3′utr |
This study |
pSJ1112 |
egl-5p(1,3 kb)::sox-2 full antisense. |
This study |
pSJ6293 |
lim-6(int4)::mCherry |
This study |
pSJ1096 |
col-34p::gfp::sox-2(cDNA)::unc-54 3′utr |
This study |
pSJ6199 |
|
Software and algorithms |
|
Adobe Illustrator CS6 |
http://www.adobe.com/products/illustrator.html |
RRID:SCR_010279
|
Fiji |
https://imagej.net/Fiji/Downloads |
RRID: SCR_002285
|
Imaris |
https://imaris.oxinst.com/packages |
RRID: SCR_007370
|
GraphPad Prism |
https://www.graphpad.com/ |
RRID: SCR_002798
|
LAS X |
https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/ |
RRID:SCR_013673
|
SnapGene viewer |
http://www.snapgene.com/products/snapgene_viewer/ |
RRID:SCR_015053
|
ApE (A plasmid Editor) |
https://jorgensen.biology.utah.edu/wayned/ape/ |
N.A |
UCSC Genome Browser |
http://genome.ucsc.edu/cgi-bin/hgTracks?db=ce11&lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chrX%3A1074694%2D1078639&hgsid=1004849487_ACKae4H3vpcGQxQU9xfEIuAVn6Sj |
RRID:SCR_005780
|
Genomatix Software: MatInspector |
https://www.genomatix.de/online_help/help_matinspector/matinspector_help.html |
RRID:SCR_008036
|
ALGEN-PROMO |
http://alggen.lsi.upc.es/cgi-bin/promo_v3/promo/promoinit.cgi?dirDB=TF_8.3 |
RRID:SCR_016926
|
FIMO |
http://meme-suite.org/doc/fimo.html |
RRID:SCR_001783
|
Jaspar |
http://jaspar.genereg.net/ |
RRID:SCR_003030
|
CIS-BP |
http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T333272_2.00 |
RRID:SCR_017236
|
|
Other |
|
Leica MZ6 |
Leica Microsystems |
|
Leica SP5 |
Leica Microsystems |
|
Leica DM6 B |
Leica Microsystems |
|
HAMAMATSU Digital Camera |
|
C11440-42U30 |