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. 2022 Sep 20;40(12):111365. doi: 10.1016/j.celrep.2022.111365
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

HA Tag Polyclonal Antibody IGBMC antibody Facility Rabbit Polyclonal
FLAG Tag Monoclonal Antibody IGBMC antibody Facility Mouse Monoclonal

Bacterial and virus strains

Escherichia coli: OP50 Caenorhabditis Genetics Center OP50
Escherichia coli: HT115(DE3) Caenorhabditis Genetics Center HT115(DE3)
Escherichia coli: DH10β Invitrogen™ DH10β
Escherichia coli: BL21(DE3) Stratagene BL21(DE3)

Chemicals, peptides, and recombinant proteins

Proteinase K from Tricachium album Sigma-Aldrich Cat#: P2308
Ampicillin Sigma-Aldrich N/A
IPTG GoldBio Cat#: I2481C
KH2PO4 Sigma-Aldrich Cat#: P0662
Na2HPO4 Thermo Fisher Scientific Cat#: S374-3
NaCl Thermo Fisher Scientific Cat#: S271-3
MgSO4 Sigma-Aldrich Cat#: M7506
cOmplete Mini, EDTA-free Protease Inhibitor Cocktail Millipore Sigma Cat#: 11836170001
Tetramisole hydrochloride Sigma-Aldrich Cat#: L9756-5G
Tricaine Sigma-Aldrich Cat#: E10521-10G
NaOH Sigma-Aldrich
NaCl Sigma-Aldrich
Tris pH8 Sigma-Aldrich
EDTA Sigma-Aldrich
Dithiothreitol (DTT) ThermoFisher Scientific Cat#: R0861

Critical commercial assays

Taq DNA Polymerase, 5 U/μL Roche 11 435 094 001
Master Mix Phusion New England Biolabs M0531L
Q5® Site-Directed Mutagenesis Kit New England Biolabs E0554S
T4 DNA Ligase New England Biolabs M0202
mMESSAGE mMACHINE™ T7 Transcription Kit Invitrogen™ AM1344
NucleoSpin® Gel and PCR Clean-up Macherey-Nagel 740609.50
NucleoSpin® Plasmid Macherey-Nagel 740588.50
NucleoBond® Xtra Midi Macherey-Nagel 740410.50
Hitrap Ni crude 1 mL columns Dutscher 17-5247-01
NGM agar plates N/A N/A
LB agar plates N/A N/A
LB N/A N/A

Experimental models: Organisms/strains

C. elegans strains: See Table S2

Oligonucleotides

Oligonucleotides: See Table S3 Sigma-Aldrich

Recombinant DNA

CloneJET PCR Cloning Kit Thermo Fisher Scientific K1231
pET30a+ Novagen pET30a+
pET32a+ Novagen pET32a+
pPD95.75 Fire Kit, Addgene pPD95.75
pPD97.82 Fire Kit, Addgene pPD97.82
pPD122.53 Fire Kit, Addgene pPD122.53
pOD1988 Wang et al., 2017 pOD1988
2nls::gfp This study pSJ553
egl-5p(6.5 kb)::nanobodyGFP::zif-1. This study pSJ559
lin-17p::2nls::gfp. This study pSJ567
lim-6(int4)::gfp This study pSJ739
lim-6int4(mutated)::gfp. This study pSJ759
let-413a::gfp::pest This study pSJ721.14
lin-26p::gfp This study pSJ722
T7p::6XHis::hmg-pop-1 This study pSJ769
T7p::6XHis::sox-2 full::HA This study pSJ6094
T7p::6XHis::hmg-pop-1::Flag This study pSJ1107
col-34p::gfp::cki-1(gDNA)::unc-54 3′utr This study pSJ1108
col-34p::gfp::cki-1(cDNA)::unc-54 3′utr This study pSJ1112
egl-5p(1,3 kb)::sox-2 full antisense. This study pSJ6293
lim-6(int4)::mCherry This study pSJ1096
col-34p::gfp::sox-2(cDNA)::unc-54 3′utr This study pSJ6199

Software and algorithms

Adobe Illustrator CS6 http://www.adobe.com/products/illustrator.html RRID:SCR_010279
Fiji https://imagej.net/Fiji/Downloads RRID: SCR_002285
Imaris https://imaris.oxinst.com/packages RRID: SCR_007370
GraphPad Prism https://www.graphpad.com/ RRID: SCR_002798
LAS X https://www.leica-microsystems.com/products/microscope-software/p/leica-las-x-ls/ RRID:SCR_013673
SnapGene viewer http://www.snapgene.com/products/snapgene_viewer/ RRID:SCR_015053
ApE (A plasmid Editor) https://jorgensen.biology.utah.edu/wayned/ape/ N.A
UCSC Genome Browser http://genome.ucsc.edu/cgi-bin/hgTracks?db=ce11&lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chrX%3A1074694%2D1078639&hgsid=1004849487_ACKae4H3vpcGQxQU9xfEIuAVn6Sj RRID:SCR_005780
Genomatix Software: MatInspector https://www.genomatix.de/online_help/help_matinspector/matinspector_help.html RRID:SCR_008036
ALGEN-PROMO http://alggen.lsi.upc.es/cgi-bin/promo_v3/promo/promoinit.cgi?dirDB=TF_8.3 RRID:SCR_016926
FIMO http://meme-suite.org/doc/fimo.html RRID:SCR_001783
Jaspar http://jaspar.genereg.net/ RRID:SCR_003030
CIS-BP http://cisbp.ccbr.utoronto.ca/TFreport.php?searchTF=T333272_2.00 RRID:SCR_017236

Other

Leica MZ6 Leica Microsystems
Leica SP5 Leica Microsystems
Leica DM6 B Leica Microsystems
HAMAMATSU Digital Camera C11440-42U30