TABLE 3.
The Kyoto encyclopedia of genes and genomes (KEGG) pathways (top 10) enriched by up-regulated differentially expressed genes (DEGs) under the three treatments.
| Treatment | Pathway ID | KEGG pathway | Gene number | P-value |
| JA | 00940 | Phenylpropanoid biosynthesis | 28 | 4.52E-08 |
| 04626 | Plant-pathogen interaction | 24 | 5.42E-06 | |
| 00945 | Stilbenoid, diarylheptanoid, and gingerol biosynthesis | 10 | 1.18E-05 | |
| 00941 | Flavonoid biosynthesis | 10 | 1.05E-04 | |
| 00592 | alpha-Linolenic acid metabolism | 9 | 1.76E-04 | |
| 00350 | Tyrosine metabolism | 7 | 0.003754 | |
| 00280 | Valine, leucine, and isoleucine degradation | 8 | 0.003862 | |
| 00591 | Linoleic acid metabolism | 4 | 0.005518 | |
| 00480 | Glutathione metabolism | 11 | 0.00604 | |
| 00071 | Fatty acid degradation | 7 | 0.008333 | |
| SA | 04626 | Plant-pathogen interaction | 45 | 1.84E-08 |
| 04016 | MAPK signaling pathway-plant | 35 | 4.98E-06 | |
| 00592 | alpha-Linolenic acid metabolism | 12 | 0.001178 | |
| 00562 | Inositol phosphate metabolism | 15 | 0.002055 | |
| 00565 | Ether lipid metabolism | 8 | 0.002609 | |
| 04075 | Plant hormone signal transduction | 39 | 0.003307 | |
| 04070 | Phosphatidylinositol signaling system | 14 | 0.005498 | |
| 00280 | Valine, leucine, and isoleucine degradation | 12 | 0.008001 | |
| 00564 | Glycerophospholipid metabolism | 16 | 0.013576 | |
| 00591 | Linoleic acid metabolism | 5 | 0.017725 | |
| COR | 00500 | Starch and sucrose metabolism | 16 | 2.00E-04 |
| 04016 | MAPK signaling pathway-plant | 17 | 0.001028 | |
| 04626 | Plant-pathogen interaction | 19 | 0.001129 | |
| 00908 | Zeatin biosynthesis | 8 | 0.005088 | |
| 00591 | Linoleic acid metabolism | 4 | 0.005518 | |
| 00950 | Isoquinoline alkaloid biosynthesis | 5 | 0.005555 | |
| 00053 | Ascorbate and aldarate metabolism | 7 | 0.006927 | |
| 00360 | Phenylalanine metabolism | 7 | 0.007606 | |
| 00562 | Inositol phosphate metabolism | 8 | 0.011395 | |
| 00350 | Tyrosine metabolism | 6 | 0.015016 |