TABLE 4.
The Kyoto encyclopedia of genes and genomes (KEGG) pathways (top 10) enriched by down-regulated differentially expressed genes (DEGs) under the three treatments.
| Treatment | Pathway ID | KEGG pathway | Gene number | P-value |
| JA | 04075 | Plant hormone signal transduction | 36 | 3.18E-06 |
| 00860 | Porphyrin and chlorophyll metabolism | 10 | 2.25E-04 | |
| 03030 | DNA replication | 10 | 3.19E-04 | |
| 00500 | Starch and sucrose metabolism | 19 | 3.65E-04 | |
| 04141 | Protein processing in endoplasmic reticulum | 24 | 0.001211 | |
| 00906 | Carotenoid biosynthesis | 6 | 0.015049 | |
| 00944 | Flavone and flavonol biosynthesis | 2 | 0.016211 | |
| 00591 | Linoleic acid metabolism | 4 | 0.016937 | |
| 00904 | Diterpenoid biosynthesis | 5 | 0.034046 | |
| 00920 | Sulfur metabolism | 5 | 0.042292 | |
| SA | 03010 | Ribosome | 103 | 2.08E-40 |
| 03030 | DNA replication | 12 | 3.67E-04 | |
| 00100 | Steroid biosynthesis | 10 | 4.34E-04 | |
| 00941 | Flavonoid biosynthesis | 11 | 0.006102 | |
| 00860 | Porphyrin and chlorophyll metabolism | 8 | 0.031731 | |
| 00944 | Flavone and flavonol biosynthesis | 2 | 0.031943 | |
| 00780 | Biotin metabolism | 4 | 0.06257 | |
| 00904 | Diterpenoid biosynthesis | 5 | 0.116215 | |
| 00920 | Sulfur metabolism | 5 | 0.139336 | |
| 00942 | Anthocyanin biosynthesis | 1 | 0.148024 | |
| COR | 04075 | Plant hormone signal transduction | 23 | 8.96E-10 |
| 00280 | Valine, leucine and isoleucine degradation | 6 | 9.85E-04 | |
| 00073 | Cutin, suberine, and wax biosynthesis | 4 | 0.002791 | |
| 00640 | Propanoate metabolism | 4 | 0.010436 | |
| 00904 | Diterpenoid biosynthesis | 3 | 0.021341 | |
| 04146 | Peroxisome | 5 | 0.024415 | |
| 00100 | Steroid biosynthesis | 3 | 0.028613 | |
| 00591 | Linoleic acid metabolism | 2 | 0.043216 | |
| 00900 | Terpenoid backbone biosynthesis | 3 | 0.081637 | |
| 00565 | Ether lipid metabolism | 2 | 0.09718 |