Table 1. Summary of the structure modeling results by DeepFold and the control methods on the 221 test proteins.
The p-values were calculated between DeepFold and the control methods using paired, two-sided Student’s t-tests.
| Method | TM-score (p-value) | RMSD (p-value) | Correct Folds* | TMDeepFold > TMMethod‡ |
|---|---|---|---|---|
| I-TASSER | 0.383 (9.4E-80) | 15.10 (7.1E-25) | 24.0% | 95.9% |
| C-I-TASSER | 0.584 (1.8E-55) | 8.89 (4.0E-26) | 67.0% | 95.9% |
| DMPfold | 0.657 (5.6E-37) | 7.81 (2.0E-18) | 79.6% | 92.3% |
| trRosetta | 0.694 (8.3E-24) | 6.81 (4.7E-09) | 85.5% | 87.8% |
| DeepFold | 0.751 | 5.61 | 92.3% | - |
* This column represents the percent of proteins with TM-scores ≥0.5.
‡ This column indicates the percent of test proteins for which DeepFold generated a model with a higher TM-score than the control method.