Extended Data Fig. 3. Pairwise genus-level Bray-Curtis distances with family members.
Boxplots quantifying the distributions of pairwise genus-level Bray-Curtis distances. Each pair consists of one sample from a family member, and a second sample from one of the following groups: family members, CPE positive, CPE negative at point of clearance, as well as more than two months post-clearance. Wilcoxon rank-sum p < 0.01 for all pairwise comparisons with the family member group. (n = 39,420 sample pairs; two-sided Wilcoxon rank-sum test p-values of comparison with the family member group – CPE positive: <2.2 × 10−16; At clearance: <2.2 × 10−16; 2 months post-clearance: <2.2 × 10−16). Centre lines in the boxplots represent median values, box limits represent upper and lower quartile values, and whiskers represent 1.5 times the interquartile range above the upper quartile and below the lower quartile.