Table 1.
The binding motifs of the 25 overlapped RBPs and their numbers of matches with ITSN1-E30 RNA sequence.
| Gene name | Motifs | References | MS score | Matching sequence | Number of matches | ||||
|---|---|---|---|---|---|---|---|---|---|
| ITSN1-E30 RNA | No RNA | ||||||||
| HNRNPK |  |
CCAWMCC | PMID: 19258514 | 2002 | 480 | CCAWMCC | 1 | ||
| PTBP1 | CUCUCU | UCUU | UUCUCU | PMID: 19296853 | 1703 | 227 | UUCUCU/UCUU | 1/11 | |
| HNRNPA2B1 |  |
 |
 |
UAGG | PMID: 23846655, PMID: 22574288 | 1448 | 140 | UAGG | 1 |
| PABPC1 |  |
PMID: 23846655 | 1254 | 364 | AAAAA | 5 | |||
| IGF2BP3 |  |
PMID: 23846655 | 1014 | 58 | — | — | |||
| ELAVL1 |  |
PMID: 23846655 | 879 | — | UUGGUUU | 1 | |||
| PABPC4 |  |
PMID: 23846655 | 577 | 221 | — | — | |||
| HNRNPC |  |
PMID: 23846655 | 545 | 187 | UUUUU | 18 | |||
| MATR3 |  |
PMID: 23846655 | 459 | 30 | — | — | |||
| IGF2BP2 |  |
PMID: 23846655 | 457 | — | AAAACA | 1 | |||
| HNRNPL |  |
 |
PMID: 23846655 | 452 | — | CACACA | 1 | ||
| HNRNPU |  |
PMID: 22574288 | 442 | 89 | UGUAGAG/UGUAUAG | 1/2 | |||
| HNRNPM |  |
PMID: 22574288 | 425 | 66 | — | — | |||
| HNRNPH1 |  |
PMID: 22574288 | 400 | 157 | GAGGAG | 1 | |||
| U2AF2 |  |
PMID: 23846655 | 389 | 37 | UUUUUC/UUUUCC | 3/4 | |||
| YBX1 |  |
CAACCACAA | PMID: 11222770, PMID: 19296853 | 326 | 67 | AACACCA | 1 | ||
| HNRNPF |  |
 |
GGGUG | UUAGG | PMID: 19296853, PMID: 22574288 | 305 | — | UUAGG | 1 |
| PCBP2 |  |
PMID: 10075886 | 301 | 35 | CCUUCCC | 1 | |||
| SFPQ |  |
PMID: 23846655 | 255 | 17 | — | — | |||
| KHDRBS1 |  |
PMID: 23846655 | 210 | — | AUAAAA | 1 | |||
| PCBP1 |  |
PMID: 10075886 | 202 | 46 | — | — | |||
| PCBP3 |  |
PMID: 23846655 | 173 | — | UUUCCC | 2 | |||
| FUS |  |
PMID: 23846655 | 113 | — | — | — | |||
| SRSF1 |  |
CRSMSGW | UGRWGVH | PMID: 19561594, PMID: 19296853 | 104 | — | — | — | |
| G3BP2 |  |
PMID: 23846655 | 103 | — | — | — | |||