Antibodies |
|
ACOX1 |
Cusabio |
Cat# PA617998HA01HU |
H3K4me3 |
Abcam |
Cat# ab8580; RRID:AB_306649
|
NUDT7 |
Youngin Frontier |
N/A |
PPARγ |
Abcam |
Cat# ab41928; RRID:AB_777392
|
FABP4 |
Abcam |
Cat# ab92501; RRID:AB_10562486
|
FASN |
Cell signaling technology |
Cat# 3180S; RRID:AB_2100796
|
PMP70 |
Abcam |
Cat# ab211533 |
SCD1 |
Abcam |
Cat# ab19862; RRID:AB_445179
|
H3K4me2 |
Cell signaling technology |
Cat#9725; RRID:AB_10205451
|
H3K27me2 |
Cell signaling technology |
Cat#9755; RRID:AB_659841
|
H3K27me3 |
Abcam |
Cat#ab6002; RRID:AB_305237
|
Histone H3 |
Cell signaling technology |
Cat#4499; RRID:AB_10544537
|
|
Chemicals, peptides, and recombinant proteins |
|
CellMask™ Orange Plasma membrane Stain |
Thermo Fisher Scientific |
C10045 |
Oil red O |
Sigma-Aldrich |
Cat# O0625s |
BODIPY493/503 |
Thermo Fisher Scientific |
Cat# D3922 |
BODIPY581/591 |
Thermo Fisher Scientific |
Cat# D3861 |
Filipin |
Sigma-Aldrich |
Cat# SAE0088 |
3rd generation packaging system |
ABM |
Cat# LV053 |
Lentifectin |
ABM |
Cat# G074 |
Lenti-X Concentrator |
Clontech |
Cat# PT4421-2 |
|
Critical commercial assays |
|
Nuclear/Cytosol Extraction Kit |
BioVision |
K266-100 |
EZ-Triglyceride Quantification Assay Kit |
DoGen |
Cat# DG-TGC100 |
EZ-Free Fatty Acid Assay Kit |
DoGen |
Cat # DG-FFA100 |
EZ-Total Cholesterol Assay Kit |
DoGen |
Cat# DG-TSC100 |
Quick Cell Proliferation Colorimetric Assay Kit |
BioVision |
Cat# K302-2500 |
Catalase Activity Colorimetric/Fluorometric Assay Kit |
BioVision |
Cat# K773-100 |
ChIP-IT Express Kit |
Active Motif |
Cat# 53009 |
|
Experimental models: Cell lines |
|
HEK-293T |
ATCC |
CRL-3216 |
Hepatocyte |
This paper |
N/A |
|
Experimental models: Organisms/strains |
|
Mouse: Nudt7+/−: C57BL/6N |
Song et al. (2018, NComm) |
N/A |
Mouse: Catalse−/−: C57BL/6N |
Generously donated by Goo Taeg Oh, Ewha Womans University |
N/A |
|
Oligonucleotides |
|
See Table S2 for primer sequences. |
|
|
|
Software and algorithms |
|
RStudio |
RStudio |
https://github.com/rstudio/rstudio |
QIAGEN’s Ingenuity Pathway Analysis algorithm (IPA) |
QIAGEN |
www.qiagen.com/ingenuity |
Gene Set Enrichment Analysis (GSEA) |
Subramanian, Tamayo, et al. (2005, PNAS) and and Mootha, Lindgren, et al. (2003, Nature Genetics) |
www.gsea-msigdb.org/gsea |