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. 2022 Sep 30;15:23. doi: 10.1186/s13040-022-00306-w

Table 12.

Average computational times (in seconds) for each single operation performed in the analysis pipeline during the complete experimental embedding

Pipeline Forest Emb. Dim. Red. Clustering Param. Comb.
tSNE Uniform 7.17±1.38 6.95±0.55 34.14±35.18 615
tSNE Log-z 7.16±1.61 10.18±8.65 33.39±36.82 601
tSNE Normal 6.46±1.38 9.54±8.89 33.71±37.63 608
UMAP Uniform 3.47±1.12 8.15±11.92 151.25±305.05 2173
UMAP Log-z 3.72±1.74 13.04±15.78 73.27±128.05 2170
UMAP Normal 4.19±1.39 3.59±0.67 76.61±131.14 2173