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. 2022 Sep 30;15:23. doi: 10.1186/s13040-022-00306-w

Table 5.

UMAP summary table

Parameters Clust. Param.a
Emb. Transf. LR LC Metr. MiD NN NSR RS Mix Sp Clust. parameter 1 parameter 2 Sil. CHI DBI
Full Log-z 0.1 1 mink 0.2 8 7 2 0.5 0.25 AP pref=-34.3 damp=0.714 0.619 2686.95 0.505
Full Unif 10 1 hamm 0.5 50 5 1 0.25 4 mb k-m bat s=10 - 0.836 13263.93 0.246
Full Norm 10 4 hamm 0.2 15 7 1 0.75 0.25 SC γ=10 - 0.602 1302.76 0.577
Part. Log-z 5 1 hamm 0.05 50 9 2 0.1 2 birch bf=13 th=0.2 0.601 1151.23 0.495
Part. Unif 0.1 1 hamm 0.01 30 5 3 0.1 0.25 AP pref=-34.3 damp=0.71 0.729 3384.71 0.414
Part. Norm 0.1 1 hamm 0.2 50 5 3 0.25 1 birch bf=78 th=0.2 0.541 936.61 0.598

aPREF preferences for each point, BAT S size of the mini batches, DAMP damping factor, TH threshold, γ kernel coefficient of radial basis function