Table 2.

Results obtained with GraphMB and state-of-the-art binning tools

HQ bins	Strong100	Hjor	Viby	Damh	Mari	AalE	Hade	Soil
GraphBin	30	11	15	14	16	12	6	0
Maxbin2	27	12	19	16	14	12	19	0
SemiBin-ocean	30	11	1	22	18	21	7	0
SemiBin-train	27	7	4	23	22	32	25	0
VAMB	28	22	12	22	30	37	28	0
MetaBAT2	32	23	29	41	39	43	44	2
GraphMB	33	25	23	43	48	46	52	3
Δ VAMB	5	3	11	21	18	9	24	3
Δ MetaBAT	1	2	−6	2	9	3	8	1
Δ % VAMB	15.2%	12.0%	47.8%	48.8%	37.5%	19.6%	46.2%	100.0%
Δ % MetaBAT	3.0%	8.0%	−26.1%	4.7%	18.8%	6.5%	15.4%	33.3%
GraphMB dRep unique	0	1	2	4	6	8	12	2
DASTool w/o GraphMB	37	32	32	41	43	43	51	15
DASTool w/GraphMB	37	33	32	46	47	48	58	16

Note: The WWTP datasets are sorted by ascending size of assembly in terms of number of contigs. The Soil dataset is separate because it has a much higher complexity than the WWTP datasets.