Phenotypes of Wnt3 knockdown with siRNA in Cladonema fertilized eggs. (A) Typical morphology of Cladonema egg and planula. The wild-type Cladonema planula larvae exhibit a slight oval shape. To deliver siRNAs targeting CpWnt3, electroporation was performed in fertilized eggs (1-cell stage), and phenotypes were confirmed at planula in one day. (B, C) Phenotypes of 1-day planula after CpWnt3 siRNA knockdown. (D) Schematic of ellipse approximation for planula morphology and calculation of the aspect ratio. The aspect ratio was calculated by dividing the long axis (a) by short axis (b). (E) Boxplots showing the aspect ratio of the 1-day planula after siCpWnt3 electroporation (0 and 300 ng/µl). Center lines show the medians; x’s denote the mean values; box limits indicate the 25th and 75th percentiles; whiskers show maximum and minimum values; inner points and outliers are represented by circles. Number of examined planulae: 0 ng/µl, n = 22; 300 ng/µl, n = 50. p = 0.658303. n.s., not significant. (F) Quantification of CpWnt3 mRNA levels in 1-day planula by RT-qPCR. CpEF1alpha was used as an internal control. Bar heights represent the mean value. Error bars indicate standard deviation. CpWnt3 expression levels are standardized relative to the control (0 ng/µl). Experiments were performed in triplicate and repeated three times. p-values: 150 ng/μl, p = 0.376498; 300 ng/μl, p = 0.073956. (G, H) Representative in situ hybridization (ISH) image of oral CpBra expression in 1-day planula for control (G: 0 ng/µl siCpWnt3) and CpWnt3 siRNA (H: 300 ng/µl siCpWnt3). The oral pole is indicated by an asterisk. (I) Quantification of CpBra expression phenotypes based on ISH images. Stacked bar plots show the percentage of 1-day planulae in each phenotypic class. CpBra expression patterns are categorized into three phenotypes (strong, weak and none). 0 ng/µl, n = 74; 300 ng/µl, n = 58. Scale bars: (B, C) 200 µm, (G, H) 50 µm.