Biological samples |
|
Source of mitoDAMPs – livers or cell lines, as desired |
|
|
|
Chemicals, peptides, and recombinant proteins |
|
Pierce Chromogenic Endotoxin Quant Kit |
Thermo Fisher Scientific |
Cat # A39552 |
Halt protease inhibitor cocktail |
Thermo Fisher Scientific |
Cat # 78430 |
Hanks Balanced Salt Solution (HBSS) |
Thermo Fisher Scientific |
Cat # 14170112 |
|
Critical commercial assays |
|
Mitochondrial Isolation Kit for Tissue |
Thermo Fisher Scientific |
Cat # 89874 |
Mitochondrial Isolation Kit for Cultured Cells |
Thermo Fisher Scientific |
Cat # 89801 |
Bio-Rad Protein assay kit II with bovine serum albumin standard |
Bio-Rad |
Cat # 5000002 |
|
Experimental models: Cell lines |
|
Hep-G2 human hepatocellular carcinoma (male) |
ATCC |
Cat # HB-8065; RRID: CVCL_0027 |
|
Experimental models: Organisms/strains |
|
Mouse: C57BL/6NCrl, 8–12-week-old |
Charles River Laboratories |
https://www.criver.com/products-services/find-model/c57bl6-mouse?region=24 |
|
Other |
|
Ultrasonic Processor Sound-Abating Enclosure |
Cole-Parmer |
Cat # UZ-04712-50 |
Sonic Dismembrator Fisherbrand™ Model 120 (referred to as “Sonicator” in this protocol) |
Thermo Fisher Scientific |
Cat # FB120110
|
Avanti J30I Ultracentrifuge |
Beckman Coulter |
Cat # J-30I |
DWK Life Sciences Kimble™ Kontes™ Dounce Tissue Grinder 15 mL using small/looser fitting pestle |
Fisher Scientific (of Thermo Fisher Scientific) |
Cat # K885300-0015 |
2 mL conical microfuge tubes (i.e., Eppendorf Safe-Lock Tubes, 2.0 mL) |
Eppendorf |
Cat # 022363352 |
15 or 50 mL conical sterile polypropylene centrifuge tubes |
Thermo Fisher Scientific |
Cat # 339650 or 339652 |