REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit anti-xCENP-A | Straight Lab8,40 | N/A |
Rabbit anti-POLR1A | Novus Biologicals | Cat#: NBP2-56122 |
Mouse anti-UBTF, clone 6B6 | Abnova | Cat#: H00007343-M01; RRID: AB_607269 |
Rabbit anti-Histone H3 | Abcam | Cat#: ab1791; RRID: AB_302613 |
Mouse anti-Beta-tubulin E7 | Developmental Studies Hybridoma Bank | Cat#: E7; RRID: AB_2315513 |
Mouse anti-c-myc, clone 9E10 | Sigma-Aldrich | Cat#: M4439; RRID: AB_439694 |
Mouse anti-Ran | BD Biosciences | Cat#: 610340; RRID: AB_397730` |
Alexa Fluor 488 | Invitrogen | Cat#: A-11008; RRID: AB_143165 |
Alexa Fluor 568 | Invitrogen | Cat#: A-11011; RRID: AB_143157 |
Goat anti-Rabbit IgG (H&L) Antibody DyLight 800 Conjugated | Rockland Immunochemicals | Cat#: 611-145-002-0.5; RRID: AB_11183542 |
Donkey anti-Mouse IgG (H&L) Antibody DyLight 680 Conjugated | Rockland Immunochemicals | Cat#: 610-744-002; RRID: AB_1660920 |
Bacterial and virus strains | ||
XL1-Blue competent cells | Agilent | Cat#: 200249 |
Chemicals, peptides, and recombinant proteins | ||
Pregnant mare serum gonadotrophin | Calbiochem | Cat#: 367222 |
Human chorionic gonadotrophin | Sigma-Aldrich | Cat#: CG10 |
Hoechst 33342 | Invitrogen | Cat#: H3570 |
Vectashield | Vector Labs | Cat#: H-1000 |
Alexa Fluor 568-dUTP | Invitrogen | Cat#: C11399 |
Random hexamers | Invitrogen | Cat#: 100026484 |
Klenow (exo-) polymerase | New England Biolabs | Cat#: M0212S |
Blocking reagent | Roche | Cat#: 11096176001 |
Salmon sperm DNA | Invitrogen | Cat#: AM9680 |
Aphidicolin | Sigma-Aldrich | Cat#: A0781 |
BI-2536 | Selleck Chemicals | Cat#: S1109 |
BMH-21 | Sigma-Aldrich | Cat#: SML1183 |
ML-60218 | Sigma-Aldrich | Cat#: 557403 |
MLN-8237 | Selleck Chemicals | Cat#: S1133 |
NMS-873 | Sigma-Aldrich | Cat#: SML-1128 |
Triptolide | Sigma-Aldridch | Cat#: T3652 |
Critical commercial assays | ||
TnT Sp6-coupled rabbit reticulocyte system | Promega | Cat#: L2080 |
Protein A Dynabeads | Fisher | Cat#: 10-002-D |
NEBNext Ultra II DNA library Prep Kit for Illumina | New England Biolabs | Cat#: E76452 |
SuperScript III First Strand Synthesis system | Thermo Fisher Scientific | Cat#: 18080051 |
RNeasy Mini kit | Qiagen | Cat#: 74104 |
Deposited data | ||
Xenopus laevis ChIP-seq | 26,73 | GSE153058 |
Xenopus tropicalis ChIP-seq | 26,73 | GSE 199671 |
Xenopus borealis ChIP-seq | This paper | PRJNA848409 |
Experimental models: Organisms/strains | ||
Xenopus laevis | Nasco | Cat#: LM00535 |
Xenopus laevis | National Xenopus Resource | Cat#: NXR_0031 |
Xenopus tropicalis | Nasco | Cat#: LM00822 |
Xenopus tropicalis | National Xenopus Resource | Cat#: NXR_1018 |
Xenopus borealis | Nasco | Cat#: LM00698 |
Oligonucleotides | ||
Primers (FCR monomer sequence amplification, pJET1.2 Sequencing Primers) FWD: CGACTCACTATAGGGAGAGCGGC REV: AAGAACATCGATTTTCCATGGCAG |
26 | N/A |
Primers (X. laevis CENP-A amplification) FWD: CAAGCTTCGAATTCTGCAGTCGACTGCCACCATGAGACCGGGCTCCACTCC REV: GGGTTAATGAGGGACTGGGGTAAGAGCCTCTAGAACTATAGTGAGTCGTATTAC |
This paper | N/A |
Primers (X. tropicalis CENP-A amplification) FWD: CAAGCTTCGAATTCTGCAGTCGACTGCCACCATGAGGCCTGGGTCTACTCC REV: (GAGTTACTGAGGGGTTGGGGTAAGAGCCTCTAGAACTATAGTGAGTCGTATTAC) |
This paper | N/A |
Primers (X. borealis CENP-A amplification) FWD: TAAGCACTCGAGGCCATGAGATCGGGGTCCACTCC REV: AATCGTTCTAGAGGCTTACCCCAGTCCCTCATTAACCC |
This paper | N/A |
Recombinant DNA | ||
Plasmid: Full length X. laevis CENP-A in pCS2+ vector | This paper | N/A |
Plasmid: Full length X. tropicalis CENP-A in pCS2+ vector | This paper | N/A |
Plasmid: Full length X. borealis CENP-A in pCS2+ vector | This paper | N/A |
Plasmid: Full length X. laevis GFP-xHJURP in pCS2+ vector | Straight Lab | ASP1640 |
Plasmid: Full length X. laevis xCENP-C-myc in pCS2+ vector | Straight Lab | ASP867 |
Plasmid: FCR monomer4 in pJET1.2 | Straight Lab26 | N/A |
Plasmid: FCR monomer10 in pJET1.2 | Straight Lab26 | N/A |
Plasmid: FCR monomer16 in pJET1.2 | Straight Lab26 | N/A |
Plasmid: FCR monomer19 in pJET1.2 | Straight Lab26 | N/A |
Software and algorithms | ||
FIJI | 81 | https://imagej.net/software/fiji/ |
Matlab | https://www.mathworks.com/products/matlab.html | |
k-mer counting pipeline | 26 | https://github.com/straightlab/xenla-cen-dna-paper |
cd-his-est | 74 | http://weizhong-lab.ucsd.edu/cd-hit/ |
Geneious (7.1.4) | https://www.geneious.com/ | |
RepeatMasker 4.0.9 | 75 | http://www.repeatmasker.org |
Other | ||