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. Author manuscript; available in PMC: 2023 Sep 26.
Published in final edited form as: Curr Biol. 2022 Aug 15;32(18):3939–3951.e6. doi: 10.1016/j.cub.2022.07.037

Key resources table

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Rabbit anti-xCENP-A Straight Lab8,40 N/A
Rabbit anti-POLR1A Novus Biologicals Cat#: NBP2-56122
Mouse anti-UBTF, clone 6B6 Abnova Cat#: H00007343-M01; RRID: AB_607269
Rabbit anti-Histone H3 Abcam Cat#: ab1791; RRID: AB_302613
Mouse anti-Beta-tubulin E7 Developmental Studies Hybridoma Bank Cat#: E7; RRID: AB_2315513
Mouse anti-c-myc, clone 9E10 Sigma-Aldrich Cat#: M4439; RRID: AB_439694
Mouse anti-Ran BD Biosciences Cat#: 610340; RRID: AB_397730`
Alexa Fluor 488 Invitrogen Cat#: A-11008; RRID: AB_143165
Alexa Fluor 568 Invitrogen Cat#: A-11011; RRID: AB_143157
Goat anti-Rabbit IgG (H&L) Antibody DyLight 800 Conjugated Rockland Immunochemicals Cat#: 611-145-002-0.5; RRID: AB_11183542
Donkey anti-Mouse IgG (H&L) Antibody DyLight 680 Conjugated Rockland Immunochemicals Cat#: 610-744-002; RRID: AB_1660920
Bacterial and virus strains
XL1-Blue competent cells Agilent Cat#: 200249
Chemicals, peptides, and recombinant proteins
Pregnant mare serum gonadotrophin Calbiochem Cat#: 367222
Human chorionic gonadotrophin Sigma-Aldrich Cat#: CG10
Hoechst 33342 Invitrogen Cat#: H3570
Vectashield Vector Labs Cat#: H-1000
Alexa Fluor 568-dUTP Invitrogen Cat#: C11399
Random hexamers Invitrogen Cat#: 100026484
Klenow (exo-) polymerase New England Biolabs Cat#: M0212S
Blocking reagent Roche Cat#: 11096176001
Salmon sperm DNA Invitrogen Cat#: AM9680
Aphidicolin Sigma-Aldrich Cat#: A0781
BI-2536 Selleck Chemicals Cat#: S1109
BMH-21 Sigma-Aldrich Cat#: SML1183
ML-60218 Sigma-Aldrich Cat#: 557403
MLN-8237 Selleck Chemicals Cat#: S1133
NMS-873 Sigma-Aldrich Cat#: SML-1128
Triptolide Sigma-Aldridch Cat#: T3652
Critical commercial assays
TnT Sp6-coupled rabbit reticulocyte system Promega Cat#: L2080
Protein A Dynabeads Fisher Cat#: 10-002-D
NEBNext Ultra II DNA library Prep Kit for Illumina New England Biolabs Cat#: E76452
SuperScript III First Strand Synthesis system Thermo Fisher Scientific Cat#: 18080051
RNeasy Mini kit Qiagen Cat#: 74104
Deposited data
Xenopus laevis ChIP-seq 26,73 GSE153058
Xenopus tropicalis ChIP-seq 26,73 GSE 199671
Xenopus borealis ChIP-seq This paper PRJNA848409
Experimental models: Organisms/strains
Xenopus laevis Nasco Cat#: LM00535
Xenopus laevis National Xenopus Resource Cat#: NXR_0031
Xenopus tropicalis Nasco Cat#: LM00822
Xenopus tropicalis National Xenopus Resource Cat#: NXR_1018
Xenopus borealis Nasco Cat#: LM00698
Oligonucleotides
Primers (FCR monomer sequence amplification, pJET1.2 Sequencing Primers)
FWD: CGACTCACTATAGGGAGAGCGGC
REV: AAGAACATCGATTTTCCATGGCAG
26 N/A
Primers (X. laevis CENP-A amplification)
FWD: CAAGCTTCGAATTCTGCAGTCGACTGCCACCATGAGACCGGGCTCCACTCC
REV: GGGTTAATGAGGGACTGGGGTAAGAGCCTCTAGAACTATAGTGAGTCGTATTAC
This paper N/A
Primers (X. tropicalis CENP-A amplification)
FWD: CAAGCTTCGAATTCTGCAGTCGACTGCCACCATGAGGCCTGGGTCTACTCC
REV: (GAGTTACTGAGGGGTTGGGGTAAGAGCCTCTAGAACTATAGTGAGTCGTATTAC)
This paper N/A
Primers (X. borealis CENP-A amplification)
FWD: TAAGCACTCGAGGCCATGAGATCGGGGTCCACTCC
REV: AATCGTTCTAGAGGCTTACCCCAGTCCCTCATTAACCC
This paper N/A
Recombinant DNA
Plasmid: Full length X. laevis CENP-A in pCS2+ vector This paper N/A
Plasmid: Full length X. tropicalis CENP-A in pCS2+ vector This paper N/A
Plasmid: Full length X. borealis CENP-A in pCS2+ vector This paper N/A
Plasmid: Full length X. laevis GFP-xHJURP in pCS2+ vector Straight Lab ASP1640
Plasmid: Full length X. laevis xCENP-C-myc in pCS2+ vector Straight Lab ASP867
Plasmid: FCR monomer4 in pJET1.2 Straight Lab26 N/A
Plasmid: FCR monomer10 in pJET1.2 Straight Lab26 N/A
Plasmid: FCR monomer16 in pJET1.2 Straight Lab26 N/A
Plasmid: FCR monomer19 in pJET1.2 Straight Lab26 N/A
Software and algorithms
FIJI 81 https://imagej.net/software/fiji/
Matlab https://www.mathworks.com/products/matlab.html
k-mer counting pipeline 26 https://github.com/straightlab/xenla-cen-dna-paper
cd-his-est 74 http://weizhong-lab.ucsd.edu/cd-hit/
Geneious (7.1.4) https://www.geneious.com/
RepeatMasker 4.0.9 75 http://www.repeatmasker.org
Other