Table 1.
Information of identified Meta-QTL (MQTL) from Meta-analysis of QTLs for seed germination traits in rice
| Meta-QTL | Chr | AIC | QTL Model | Markers interval (QTL region) | Closest SSR marker | Meta-QTL peak position (cM) | Meta-QTL physical distance (bp) | No. of original QTLs | Mean Initial CI (cM) | Mean Phenotypic Variance of the QTL (%) | Meta-QTL CI (95%) cM | No. of gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MQTL1.1 | 1 | 110.93 | 4 | G8027˽115,511 | RM3148 | 5.59 | 16,078,082–2,800,122 | 1 | 14.9 | 11.17 | 13.05 | 41 |
| MQTL1.2 | S1_7778029˽S1_8924173 | RM1287 | 58.56 | 10,307,015–12,264,117 | 2 | 15.95 | 36.7 | 10.55 | 20 | |||
| MQTL1.3 | S1_25275937˽S1_25593034 | RM7419 | 117.76 | 27,626,912–28,333,800 | 3 | 14.35 | 18.52 | 2.17 | 23 | |||
| MQTL1.4 | S1_28101401˽S1_28947942 | RM6666 | 130.04 | 31,305,693–32,019,592 | 3 | 7.13 | 9.92 | 4 | 34 | |||
| MQTL2.1 | 2 | 41.39 | 3 | S2_3978527˽id2005033 | RM6233 | 32.57 | 4,414,124–9,032,782 | 1 | 20.58 | 4 | 20.58 | 26 |
| MQTL2.2 | S2_21852479˽S2_22880103 | RM5804 | 98.57 | 23,862,405–25,302,318 | 3 | 18.46 | 6.92 | 8.82 | 28 | |||
| MQTL2.3 | S2_31117728˽S2_32291905 | RM1251 | 150.98 | 34,081,397–35,160,225 | 2 | 12.5 | 11.77 | 7.37 | 19 | |||
| MQTL3.1 | 3 | 77.9 | 3 | RM1332˽S3_2715095 | RM6849 | 15.66 | 2,435,994–4,316,639 | 3 | 19.83 | 7.047 | 8.26 | 19 |
| MQTL3.2 | S3_12754378˽id3009515 | RM6881 | 78.53 | 16,685,678–16,685,710 | 1 | 0.9 | 3.4 | 0.9 | 3 | |||
| MQTL3.3 | S3_14738562˽S3_16599892 | RM5626 | 100.59 | 23,628,236–24,671,291 | 2 | 9.42 | 8.395 | 6.44 | 26 | |||
| MQTL4.1 | 4 | 25.21 | 3 | S4_598874˽RM2811 | RM335 | 4.98 | 176,849–2,074,339 | 2 | 22.79 | 15.725 | 6 | 24 |
| MQTL4.2 | id4002942˽id4003491 | RM6314 | 38.34 | 1,663,548–18,627,911 | 1 | 11.02 | 5.6 | 11.02 | 10 | |||
| MQTL4.3 | RM2636˽RM3276 | RM317 | 94.79 | 29,219,406–30,715,786 | 1 | 15.3 | 12.7 | 15.3 | 25 | |||
| MQTL5.1 | 5 | 64.56 | 3 | S5_103866˽S5_816467 | RM507 | 1.58 | 71,514–10,676,235 | 3 | 11.27 | 11.27 | 4.92 | 35 |
| MQTL5.2 | RM1024˽S5_3774907 | RM3345 | 17.79 | 1,174,375–3,187,129 | 4 | 22.49 | 13.43 | 9.61 | 20 | |||
| MQTL5.3 | S5_2096055˽S5_4565557 | RM4710 | 21.52 | 2,084,818–1,174,375 | 4 | 22.49 | 13.43 | 13.56 | 40 | |||
| MQTL6.1 | 6 | 44.38 | 3 | S6_2282606˽S6_3465712 | RM6536 | 13.97 | 2,364,986–4,439,584 | 2 | 8.82 | 17.19 | 6.24 | 10 |
| MQTL6.2 | S6_11989668˽RM3827 | RM7551 | 70.87 | 17,483,480–21,950,443 | 3 | 14.18 | 6.77 | 12.19 | 6 | |||
| MQTL6.3 | S6_24093510˽S6_25108804 | RM5509 | 108.14 | 26,873,633–28,149,934 | 1 | 9.3 | 24 | 9.3 | 27 | |||
| MQTL7.1 | 7 | 65.69 | 4 | S7_2565701˽S7_2691147 | RM5055 | 14.82 | 2,557,838–3,174,427 | 2 | 24.6 | 8.45 | 2 | 20 |
| MQTL7.2 | RM8263˽RM8022 | RM6081 | 41.62 | 4,688,095–8,165,670 | 1 | 12.11 | 6.8 | 12.11 | 26 | |||
| MQTL7.3 | S7_8556262˽S7_13750881 | RM2530 | 54.13 | 15,357,245–15,357,268 | 4 | 13.44 | 11.8 | 4.19 | 12 | |||
| MQTL7.4 | S7_19631949˽S7_22277522 | RM7564 | 79.82 | 20,733,917–23,958,017 | 2 | 25.63 | 6.13 | 13.54 | 28 | |||
| MQTL8.1 | 8 | 80.72 | 4 | S8_1128224˽S8_1537411 | RM3702 | 13.08 | 1,182,996–1,555,519 | 4 | 13.28 | 10.41 | 0.99 | 27 |
| MQTL8.2 | S8_5250169˽RM6429 | RM7057 | 43.72 | 5,102,982–8,379,130 | 2 | 28.18 | 10.16 | 9.07 | 22 | |||
| MQTL8.3 | S8_23316147˽RM556 | RM195 | 82.59 | 21,137,914–22,335,423 | 2 | 10.8 | 12.87 | 7.63 | 22 | |||
| MQTL8.4 | S8_25110888_RM281 | RM6765 | 108.47 | 24,065,708–3,174,380 | 1 | 22.48 | 15.93 | 22.48 | 22 | |||
| MQTL10.1 | 10 | 8.47 | 1 | S10_10102852˽S10_11244588 | RM4455 | 22.84 | 10,178,447–11,221,582 | 2 | 7.9 | 6.6 | 5.59 | 17 |
| MQTL11.1 | 11 | 40.93 | 3 | S11_680258˽RM7557 | RM3717 | 5.68 | 1,174,156–2,327,502 | 2 | 12.52 | 18.9 | 6.54 | 29 |
| MQTL11.2 | RM2459˽S11_2838776 | RM2459 | 12.51 | 2,391,067–3,025,484 | 4 | 9.92 | 14.74 | 4.92 | 33 | |||
| MQTL11.3 | S11_10847755˽S11_16282381 | RM7391 | 55.21 | 9,884,968–13,366,650 | 1 | 3.7 | 54.9 | 3.7 | 12 | |||
| MQTL12.1 | 12 | 6.7 | 1 | S12_25505958˽RM17 | RM5282 | 96 | 23,606,775–27,024,556 | 1 | 16.47 | 5 | 16.47 | 22 |