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. 2022 Aug 21;113(10):3362–3375. doi: 10.1111/cas.15485

TABLE 1.

Oligonucleotides

Use ID Type Sequence (5′→3′)
Genome editing G1 Guide RNA GTTATCTCATTCTTACACAAAGG
G2 Guide RNA ATTCTTACACAAAGGACACTGGG
O1 ssODN ACTCCTTAACCAGAAGAAAGGACCTTCCCAGTGTCCTT[A]GTGTAAGAATGAGATAACCAAAAGGTAAATAACATGTGTAA
Genotyping F1a Forward primer TGCAGGTAAGTGTAATTTTCATAGG
F1b Forward primer GGACCTTCCCAGTGTCCTT[A]
R1 Reverse primer CCGATGTGCATGGTACTGTC
qPCR F2 Forward primer TAACCAGAAGAAAGGAC
R2 Reverse primer CTACACATCAATTTCTACTT
P1 Probe, FAM CAC[a]AAGGAC
P2 Probe, HEX C[T]aAGGACACT
S1 Standard CCACACAGTGCGACCACATATTTTGCAAATTTTGTATGCTGAAACTCCTTAACCAGAAGAAAGGACCTTCCCAGTGTCCTT[T]GTGTAAGAATGAGATAACCAAAAGGAGCCTACAAGGAAGTGCAAGGTTTAGTCAACTTGTTGAAGAGCTGCTGAAAAT
S2 Standard CCACACAGTGCGACCACATATTTTGCAAATTTTGTATGCTGAAACTCCTTAACCAGAAGAAAGGACCTTCCCAGTGTCCTT[A]GTGTAAGAATGAGATAACCAAAAGGAGCCTACAAGGAAGTGCAAGGTTTAGTCAACTTGTTGAAGAGCTGCTGAAAAT
Sequencing F3 Forward primer CACTGCATAGGGAAACTGGC
R3 Reverse primer GGGACTGATCTAGGGGTGAC
F4 Forward primer AACCCTACCCAGAAAGCTCC
R4 Reverse primer ACCTGCAGCTGTCTTGAGAT
F5 Forward primer GACCCCTTCATTGTCCTCCA
R5 Reverse primer TCCCCTAGCTCCCTCATGAT
F6 Forward primer AGTCAGTCCACCATGTCAGT
R6 Reverse primer GCAGAGCAGACCCATCGATA
F7 Forward primer GCACACCACATCTCTCCTCT
R7 Reverse primer GCCAAACAACATGCATGACA
F8 Forward primer GTTTCTGGTAAGCAAGCCCC
R8 Reverse primer GATCAACTTCTGGGCCATGC
F9 Forward primer TGCCCCTTCCCATTATCACA
R9 Reverse primer ATCCATGGCAAAGGGAGACA
F10 Forward primer CCTGTAACTCCAGCTCCCAA
R10 Reverse primer GAAGGCAGGAGGTGAAGTCT
F11 Forward primer GGCAGCCTCGTTACACAATC
R11 Reverse primer GTGCCCCTCAGACTCTTCAT

Note: Nucleotides in bracket, location of introduced T‐to‐A mutation. Allele‐specific quantitative PCR (qPCR) was carried out by using the cycleave PCR technique. This technique uses a chimeric DNA–RNA–DNA probe labeled with a fluorescent dye and a quencher at its ends; if the probe generates a perfect hybrid with the PCR product, it is digested with RNaseH at the RNA–DNA heteroduplex, leading to separation of the quencher and dye and increased fluorescence; any mismatch at or near the heteroduplex does not lead to RNaseH digestion. Lowercase letter, ribonucleotide; uppercase letter, deoxyribonucleotide. FAM, 6‐carboxyfluorescein‐labeled; HEX, hexachlorofluorescein‐labeled; ssODN, single‐stranded oligodeoxynucleotide.