TABLE 1.
Use | ID | Type | Sequence (5′→3′) |
---|---|---|---|
Genome editing | G1 | Guide RNA | GTTATCTCATTCTTACACAAAGG |
G2 | Guide RNA | ATTCTTACACAAAGGACACTGGG | |
O1 | ssODN | ACTCCTTAACCAGAAGAAAGGACCTTCCCAGTGTCCTT[A]GTGTAAGAATGAGATAACCAAAAGGTAAATAACATGTGTAA | |
Genotyping | F1a | Forward primer | TGCAGGTAAGTGTAATTTTCATAGG |
F1b | Forward primer | GGACCTTCCCAGTGTCCTT[A] | |
R1 | Reverse primer | CCGATGTGCATGGTACTGTC | |
qPCR | F2 | Forward primer | TAACCAGAAGAAAGGAC |
R2 | Reverse primer | CTACACATCAATTTCTACTT | |
P1 | Probe, FAM | CAC[a]AAGGAC | |
P2 | Probe, HEX | C[T]aAGGACACT | |
S1 | Standard | CCACACAGTGCGACCACATATTTTGCAAATTTTGTATGCTGAAACTCCTTAACCAGAAGAAAGGACCTTCCCAGTGTCCTT[T]GTGTAAGAATGAGATAACCAAAAGGAGCCTACAAGGAAGTGCAAGGTTTAGTCAACTTGTTGAAGAGCTGCTGAAAAT | |
S2 | Standard | CCACACAGTGCGACCACATATTTTGCAAATTTTGTATGCTGAAACTCCTTAACCAGAAGAAAGGACCTTCCCAGTGTCCTT[A]GTGTAAGAATGAGATAACCAAAAGGAGCCTACAAGGAAGTGCAAGGTTTAGTCAACTTGTTGAAGAGCTGCTGAAAAT | |
Sequencing | F3 | Forward primer | CACTGCATAGGGAAACTGGC |
R3 | Reverse primer | GGGACTGATCTAGGGGTGAC | |
F4 | Forward primer | AACCCTACCCAGAAAGCTCC | |
R4 | Reverse primer | ACCTGCAGCTGTCTTGAGAT | |
F5 | Forward primer | GACCCCTTCATTGTCCTCCA | |
R5 | Reverse primer | TCCCCTAGCTCCCTCATGAT | |
F6 | Forward primer | AGTCAGTCCACCATGTCAGT | |
R6 | Reverse primer | GCAGAGCAGACCCATCGATA | |
F7 | Forward primer | GCACACCACATCTCTCCTCT | |
R7 | Reverse primer | GCCAAACAACATGCATGACA | |
F8 | Forward primer | GTTTCTGGTAAGCAAGCCCC | |
R8 | Reverse primer | GATCAACTTCTGGGCCATGC | |
F9 | Forward primer | TGCCCCTTCCCATTATCACA | |
R9 | Reverse primer | ATCCATGGCAAAGGGAGACA | |
F10 | Forward primer | CCTGTAACTCCAGCTCCCAA | |
R10 | Reverse primer | GAAGGCAGGAGGTGAAGTCT | |
F11 | Forward primer | GGCAGCCTCGTTACACAATC | |
R11 | Reverse primer | GTGCCCCTCAGACTCTTCAT |
Note: Nucleotides in bracket, location of introduced T‐to‐A mutation. Allele‐specific quantitative PCR (qPCR) was carried out by using the cycleave PCR technique. This technique uses a chimeric DNA–RNA–DNA probe labeled with a fluorescent dye and a quencher at its ends; if the probe generates a perfect hybrid with the PCR product, it is digested with RNaseH at the RNA–DNA heteroduplex, leading to separation of the quencher and dye and increased fluorescence; any mismatch at or near the heteroduplex does not lead to RNaseH digestion. Lowercase letter, ribonucleotide; uppercase letter, deoxyribonucleotide. FAM, 6‐carboxyfluorescein‐labeled; HEX, hexachlorofluorescein‐labeled; ssODN, single‐stranded oligodeoxynucleotide.