Table 1.
All data | Ct S gene <33 | Ct ORF1 gene <33 | |||||||
---|---|---|---|---|---|---|---|---|---|
Prevalence | Sample prev = 0.04 | Prev = 0.005 | Prev = 0.001 | Sample prev = 0.04 | Prev = 0.005 | Prev = 0.001 | Sample prev = 0.04 | Prev = 0.005 | Prev = 0.001 |
Sensitivity | 68.9 (55.7–80.1) | 77.8 (64.4–88.0) | 79.2 (65.9–89.2) | ||||||
Specificity | 99.9 (99.9–100.0) | 99.9 (99.6–100.0) | 99.9 (99.6–100.0) | ||||||
PPV | 97.7 (98.0–99.0) | 82.1 (39.1–97.0) | 47.8 (11.3–86.7) | 97.7 (85.5–99.7) | 83.8 (42.1–97.4) | 50.8 (12.6–88.0) | 97.7 (85.4–99.7) | 84.1 (42.6–97.4) | 51.3 (12.9–88.2) |
NPV | 98.6 (85.5–99.7) | 99.8 (99.8–99.9) | 100.0 (100–100) | 99.1 (98.5–99.5) | 99.9 (99.8–99.9) | 100.0 (100–100) | 99.2 (98.6–99.5) | 99.9 (99.8–100) | 100.0 (100–100) |
Overall sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) for the antigen test. In brackets, the exact binomial 95% confidence interval is reported. The PPV and NPV are presented assuming a prevalence of 0.04, as observed in the hospital surveillance study, as well as at the lower prevalence values of 0.005 and 0.001