Table 2.
Oligonucleotide primers used in MPCR
| Virus | Genomic region (ORF) | Primer sequence | Length of amplicon (bp) |
|---|---|---|---|
| VACV | F4L (genus-specific region) | 5′-cgttggaaaacgtgagtccgg-3′ | 292 |
| 5′ attggcgttttttgcagccag-3′ | |||
| CPXV | B9R | 5′-atcagatggaattatctctcacccg-3′ | 421 |
| 5′ gataatttgatccatctcgtccacc-3′ | |||
| MPXV | E5R | 5′-atgttgatattaataatcgtattgtggtt-3′ | 581 (West African) |
| 5′-aaagtcaatacactcttaaagattctcaa-3′ | 832 (Central African) | ||
| VARV | B11R-B12R | 5′-catccgatattattgtaaccacaatg-3′ | 203 |
| VACV | C9L | 5′-ggtgtagtcgtaatcgtaatcgtctaatt-3′ 5′-aagatactctatgatagttgtaaaacatttaacatc-3′ | 492 |
| 5′-cccaacatttctaaatctcctcgt-3′ |
ORF, open reading frame; ORF names are given according to the designations conventionally accepted for each virus (see Fig. 1). VACV, vaccinia virus strain Copenhagen [29]; CPXV, cowpox virus strain GRI-90 [28]; MPXV, monkeypox virus strain Zaire-96-I-16 [27]; VARV, variola virus strain India-1967 [24].