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. 2004 Oct 18;19(1):1–8. doi: 10.1016/j.mcp.2004.07.004

Table 2.

Oligonucleotide primers used in MPCR

Virus Genomic region (ORF) Primer sequence Length of amplicon (bp)
VACV F4L (genus-specific region) 5′-cgttggaaaacgtgagtccgg-3′ 292
5′ attggcgttttttgcagccag-3′
CPXV B9R 5′-atcagatggaattatctctcacccg-3′ 421
5′ gataatttgatccatctcgtccacc-3′
MPXV E5R 5′-atgttgatattaataatcgtattgtggtt-3′ 581 (West African)
5′-aaagtcaatacactcttaaagattctcaa-3′ 832 (Central African)
VARV B11R-B12R 5′-catccgatattattgtaaccacaatg-3′ 203
VACV C9L 5′-ggtgtagtcgtaatcgtaatcgtctaatt-3′ 5′-aagatactctatgatagttgtaaaacatttaacatc-3′ 492
5′-cccaacatttctaaatctcctcgt-3′

ORF, open reading frame; ORF names are given according to the designations conventionally accepted for each virus (see Fig. 1). VACV, vaccinia virus strain Copenhagen [29]; CPXV, cowpox virus strain GRI-90 [28]; MPXV, monkeypox virus strain Zaire-96-I-16 [27]; VARV, variola virus strain India-1967 [24].