Table 3:
Statistics for the H. werneckii genomes sequenced in this study (strains 1–54)
| Haploid strains | Diploid strains | Tetraploid strain | |||||
|---|---|---|---|---|---|---|---|
| Average | Median | SD | Average | Median | SD | / | |
| Coverage | 730 | 619 | 464 | 469 | 485 | 177 | 276 |
| Genome assembly size (Mbp) | 26.52 | 26.19 | 1.47 | 49.30 | 49.22 | 1.74 | 94.67 |
| Number of contigs | 796 | 638 | 421 | 6,885 | 3,806 | 4,457 | 30,312 |
| Contig N50 (kbp) | 136 | 138 | 28 | 22 | 26 | 14 | 5 |
| GC content | 53.22% | 53.33% | 0.33% | 53.40% | 53.40% | 0.19% | 53.40% |
| CDS total length (Mbp) | 14.56 | 14.39 | 0.80 | 27.02 | 27.87 | 1.45 | 49.02 |
| CDS total length (% of genome) | 54.94% | 55.27% | 1.67% | 54.80% | 55.59% | 2.15% | 51.78% |
| Gene models (n) | 9,519 | 9,344 | 665 | 20,417 | 19,240 | 1,709 | 46,596 |
| Exons per gene (average) | 2.34 | 2.34 | 0.06 | 2.10 | 2.20 | 0.14 | 1.87 |
| Intron average length (bp) | 93.17 | 93.00 | 2.53 | 94.11 | 94.00 | 4.73 | 92.00 |
| Complete BUSCOs | 95.99% | 96.00% | 0.34% | 86.86% | 93.40% | 10.09% | 89.60% |
| Complete and single-copy BUSCOs | 95.83% | 95.90% | 0.35% | 21.33% | 16.30% | 10.50% | 33.20% |
| Complete and duplicated BUSCOs | 0.16% | 0.20% | 0.06% | 65.53% | 77.30% | 19.20% | 56.40% |
| Fragmented BUSCOs | 0.82% | 0.75% | 0.14% | 7.05% | 3.20% | 5.87% | 5.10% |
| Missing BUSCOs | 3.19% | 3.10% | 0.30% | 6.09% | 3.30% | 4.24% | 5.30% |
| Total SNP density (SNPs per total genome size) | 4.04% | 4.54% | 1.11% | 3.44% | 3.56% | 1.12% | / |
| Heterozygous SNP density (SNPs per total genome size) | 0.01% | 0.01% | 0.01% | 2.46% | 2.58% | 0.74% | / |