Table 1.

Overall expression predictions.

Genome	TE group	Method	TP	FP	FN
hg38	Old	scTE	95.502	4.498	0
hg38	Young	scTE	81.9	18.1	0
mm10	Old	scTE	93.96	4.314	1.726
mm10	Young	scTE	78.723	21.198	0.079
hg38	Old	SoloTE	93.834	4.143	2.023
hg38	Young	SoloTE	55.959	39.806	4.235
mm10	Old	SoloTE	84.991	8.379	6.63
mm10	Young	SoloTE	26.06	64.162	9.777

For each simulated dataset, defined by the genome used (“Genome”) and the TE group (“Old” or “Young”), the performance of TE detection by “scTE” and “SoloTE” (“Method” column) is reported. “True Positives” (TP) correspond to TEs reported by the method that also are in the real expression matrix (i.e., a TE correctly identified), “False Positives” (FP) correspond to TEs reported by the method that are not actually expressed, and “False Negatives” (FN) correspond to TEs in the real expression matrix that were not detected by a method.