TABLE 1.
List of the 12 most prevalent and abundant OTUs of the leaf compartment among 163 natural populations of Arabidopsis thaliana located south-west of France.
| OTU Bartoli et al. (2018) | gyrB based taxonomic affilation | Prevalence (%) | Mean relative abundance (%) | ANI based taxonomic affilation | Strain name |
| OTU_1 | Sphingomonas sp. | 44.6 | 16.07 | ||
| OTU_2 | Paraburkholderia fungorum | 5.7 | 1.79 | Paraburkholderia fungorum | OTU2_Pfu_1 |
| OTU2_Pfu_2 | |||||
| OTU2_Pfu_3 | |||||
| OTU_3 | Collimonas sp. | 43.1 | 5.65 | Oxalobacteraceae bacterium | OTU3a_Oxa_1 |
| OTU3a_Oxa_2 | |||||
| OTU3b_Oxa_1 | |||||
| OTU3b_Oxa_2 | |||||
| OTU_4 | Variovorax sp. | 41.8 | 5.33 | Comamonadaceae bacterium | OTU4_Com_1 |
| OTU_5 | Pseudomonas moraviensis | 12.3 | 1.18 | Pseudomonas moraviensis | OTU5_Pmo_1 |
| OTU5_Pmo_2 | |||||
| OTU5_Pmo_3 | |||||
| OTU_6 | Pseudomonas koreensis | 12.2 | 1.11 | Pseudomonas siliginis | OTU6_Psi_1 |
| OTU6_Psi_2 | |||||
| OTU6_Psi_3 | |||||
| OTU6_Psi_4 | |||||
| OTU6_Psi_5 | |||||
| OTU6_Psi_6 | |||||
| OTU_10 | Acidovorax sp. | 11.9 | 1.36 | – | |
| OTU_12 | Variovorax sp. | 9.4 | 0.7 | – | |
| OTU_13 | Methylorubrum extorquens | 14.1 | 0.98 | Methylobacterium sp. | OTU13_Msp_1 |
| OTU13_Msp_2 | |||||
| OTU_14 | Caulobacter sp. | 9.9 | 0.89 | – | |
| OTU_15 | Modestobacter muralis | 9.7 | 0.85 | – | |
| OTU_29 | Sphingomonas melonis | 14 | 0.89 | Sphingomonadaceae bacterium | OTU29_Sph_1 |
| OTU29_Sph_2 | |||||
| OTU29_Sph_3 |
Lines highlighted in light grey correspond to OTUs for which representative strains have been isolated.