Table 4.
Ploidy in LmjLCB2-/- of Leishmania major.
| Contig | Chr size (bp) * | Chr coordinates | log2 copy ratio to WT | Call | gain/loss size (bp) | Chr affected (%) | Genes affected | ||
|---|---|---|---|---|---|---|---|---|---|
| start | end | loss | gain | ||||||
| LmjF.01 | 268988 | 1 | 268988 | -0.99 | deleted | 268,987 | 100.0 | multiple ** | |
| LmjF.05 | 465823 | 1001 | 455000 | 0.17 | amplified | 453,999 | 97.5 | multiple ** | |
| LmjF.11 | 579000 | 1 | 497000 | -0.58 | deleted | 496,999 | 85.8 | multiple ** | |
| 508001 | 518000 | -29.89 | deleted | 9,999 | 1.7 | LmjF.11.1240 (5727 bp) | |||
| 529001 | 582573 | -0.56 | deleted | 53,572 | 9.3 | multiple ** | |||
| LmjF.13 | 654595 | 565001 | 574000 | -3.76 | deleted | 8,999 | 1.4 | LmjF.13.1530 (3294 bp) & LmjF.13.1540 (1464 bp) | |
| LmjF.35 | 2090474 | 85001 | 88000 | -10.79 | deleted | 2,999 | 0.1 | LmjF.35.0320 (1617 bp) | |
*Chromosome (Chr) size and gene IDs were retrieved from TryTripDB (https://tritrypdb.org). **See S4 and S5 Table for a complete list.