TABLE 3.
Characteristic domains identified for AbmB, AbmC, AbmD, and AbmG
| Protein for which domain is characteristic | Motifa | PROSITE no. |
|---|---|---|
| Short-chain alcohol dehydrogenase (AbmB) | [LIVSPADNK]-X12-Y-[PSTAGNCV]-[STAGNQCIVM]-[STAGC]-K-[PC]-[SGH]-[LIVMSTAGD]-X2-[LIVMFYW]-X4-[GSACQRHM] | PS00061 |
| Enoyl-CoA hydratase/isomerase (AbmC) | [LIVM]-[STA]-X-[LIVM]-[DENQRHSTA]-G-X3-[AG]-X6-[LIVMST]-X-[CSTA]-[DQHP]-[LIVMFY] | PDOC00150 |
| Acyl-CoA dehydrogenase (AbmD) | [GAC]-[LIVM]-[ST]-E-X2-[GSAN]-G-[ST]-D-X2-[GSA] | PDOC00070 |
| CoA ligase, nucleotide binding region (AbmG) | [LIVMFY]-X2-[STG]-[STAG]-G-[ST]-[STEI]-[SG]-X-[PASLIVM]-[KR] | PDOC00427 |
a
Possible amino acids are surrounded by brackets. X, no amino acid consensus identified for motif.