TABLE 5.

Local similarity cutoffs and confidence measures predicted for the reference CBSITScomplete, CBSITS1, and CBSITS2 data sets

Level	Prediction	CBSITScomplete	CBSITS1	CBSITS2
Species	Cutoffs	0.906–0.999	0.931–0.996	0.919–0.996
	Median cutoff	0.991	0.988	0.99
	Confidences	0.788–1	0.7855–1	0.8165–1
	Median confidence	0.9165	0.9233	0.9185
Genus	Cutoff	0.825–0.987	0.7–0.993	0.621–0.995
	Median cutoff	0.939	0.958	0.959
	Confidence	0.5913–0.9725	0.504–0.9326	0.5115–0.9512
	Median confidence	0.7735	0.6835	0.6795
Family	Cutoff	0.825–0.92	0.702–0.966	0.502–0.966
	Median cutoff	0.8845	0.9255	0.9245
	Confidence	0.6592–0.8325	0.5408–0.9266	0.5772–0.9266
	Median confidence	0.7509	0.6813	0.6688
Order	Cutoff in Sordariomycetes	0.848	0.946	0.925
	Confidence in Sordariomycetes	0.8887	0.7166	0.8136
	Cutoff in Agaricomycetes	0.837	0.86	0.891
	Confidence in Agaricomycetes	0.7925	0.6877	0.6264
	Cutoff in Dothideomycetes	0.84	0.802	0.913
	Confidence in Dothideomycetes	0.8399	0.806	0.819
	Cutoff in Ascomycota	0.848	0.931	0.926
	Confidence in Ascomycota	0.8405	0.6827	0.7893
	Cutoff in Basidiomycota	0.837	0.86	0.891
	Confidence in Basidiomycota	0.8015	0.7039	0.6478
Class	Cutoff in Ascomycota	0.831	0.852	0.891
	Confidence in Ascomycota	0.8252	0.7485	0.8108
	Cutoff in Basidiomycota		0.501	0.482
	Confidence in Basidiomycota		0.9448	0.9552

Notes: Only clades with more than 30 sequences and 10 groups were included in the prediction.