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. 2022 Sep 30;14(1):2127446. doi: 10.1080/19490976.2022.2127446

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© 2022 The Author(s). Published with license by Taylor & Francis Group, LLC.

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 5. — Functional alteration of the gut microbiota a) at baseline (D0) between mice kept on either isoflavone-rich (ISO) or phyto-free (PF) diet and b)at day 28 (D28) after diet switch from ISO to PF (ISO_PF) and PF to ISO (PF_ISO). The differentially abundant pathways were identified using the Welch test with pvalue_cutoff of 0.1 p_adjust=”BH” and nperm=1000 between the two groups. For the change in functional profile over time D0 and D28 were compared using the welch test with pvalue_cutoff of 0.2 p_adjust=”BH” and nperm=1000 between the groups of c) diet change from ISO to PF and d) diet change from PF to ISO. The functional profile was obtained using humann3 from the MetaCyc database.